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Dmitry Chudakov
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2020 – today
- 2024
- [j10]Vadim K. Karnaukhov, Dmitrii S. Shcherbinin, Anton O. Chugunov, Dmitriy M. Chudakov, Roman G. Efremov, Ivan V. Zvyagin, Mikhail Shugay:
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen. Nat. Comput. Sci. 4(7): 510-521 (2024) - 2023
- [j9]Alexey N. Davydov, Dmitry Bolotin, Stanislav V. Poslavsky
, Dmitry M. Chudakov
:
Comment on 'rigorous benchmarking of T cell receptor repertoire profiling methods for cancer RNA sequencing'. Briefings Bioinform. 24(6) (2023) - 2021
- [c1]Dmitry Chudakov, Sergey Alyamkin, Alexander Goncharenko, Andrey Denisov
:
Iterative Adaptation to Quantization Noise. IWANN (1) 2021: 303-310 - 2020
- [j8]Dmitry V. Bagaev, Renske M. A. Vroomans, Jerome Samir, Ulrik Stervbo, Cristina Rius
, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf, Evgeny S. Egorov, Ivan V. Zvyagin
, Nina Babel
, David K. Cole
, Andrew J. Godkin, Andrew K. Sewell
, Can Kesmir, Dmitry M. Chudakov
, Fabio Luciani, Mikhail Shugay
:
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Res. 48(Database-Issue): D1057-D1062 (2020)
2010 – 2019
- 2018
- [j7]Mikhail Shugay
, Dmitriy V. Bagaev, Ivan V. Zvyagin
, Renske M. A. Vroomans, Jeremy Chase Crawford
, Garry Dolton, Ekaterina Komech, Anastasiya L. Sycheva, Anna E. Koneva
, Evgeniy S. Egorov, Alexey V. Eliseev, Ewald van Dyk, Pradyot Dash, Meriem Attaf, Cristina Rius
, Kristin Ladell
, James E. McLaren
, Katherine K. Matthews
, E. Bridie Clemens, Daniel C. Douek, Fabio Luciani, Debbie van Baarle, Katherine Kedzierska
, Can Kesmir, Paul G. Thomas
, David A. Price
, Andrew K. Sewell
, Dmitry M. Chudakov
:
VDJdb: a curated database of T-cell receptor sequences with known antigen specificity. Nucleic Acids Res. 46(Database-Issue): D419-D427 (2018) - 2017
- [j6]Mikhail Shugay
, Andrew R. Zaretsky
, Dmitriy A. Shagin
, Irina A. Shagina
, Ivan A. Volchenkov, Andrew A. Shelenkov
, Mikhail Y. Lebedin
, Dmitriy V. Bagaev, Sergey A. Lukyanov, Dmitry M. Chudakov
:
MAGERI: Computational pipeline for molecular-barcoded targeted resequencing. PLoS Comput. Biol. 13(5) (2017) - [j5]Mikhail V. Pogorelyy
, Yuval Elhanati
, Quentin Marcou
, Anastasiia L. Sycheva, Ekaterina Komech
, Vadim I. Nazarov
, Olga V. Britanova, Dmitry M. Chudakov
, Ilgar Z. Mamedov
, Yuri B. Lebedev
, Thierry Mora
, Aleksandra M. Walczak:
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires. PLoS Comput. Biol. 13(7) (2017) - 2016
- [j4]Karen S. Sarkisyan
, Dmitry Bolotin
, Margarita V. Meer, Dinara R. Usmanova, Alexander S. Mishin
, George V. Sharonov
, Dmitry N. Ivankov
, Nina G. Bozhanova
, Mikhail S. Baranov
, Onuralp Soylemez, Natalya S. Bogatyreva
, Peter K. Vlasov, Evgeny S. Egorov, Maria D. Logacheva, Alexey S. Kondrashov, Dmitry M. Chudakov
, Ekaterina V. Putintseva
, Ilgar Z. Mamedov
, Dan S. Tawfik, Konstantin A. Lukyanov
, Fyodor A. Kondrashov:
Local fitness landscape of the green fluorescent protein. Nat. 533(7603): 397-401 (2016) - 2015
- [j3]Vadim Nazarov
, Mikhail Pogorelyy
, Ekaterina Komech, Ivan Zvyagin
, Dmitry Bolotin
, Mikhail Shugay
, Dmitry Chudakov
, Yuri B. Lebedev
, Ilgar Z. Mamedov
:
tcR: an R package for T cell receptor repertoire advanced data analysis. BMC Bioinform. 16: 175:1-175:5 (2015) - [j2]Mikhail Shugay
, Dmitriy V. Bagaev, Maria A. Turchaninova
, Dmitriy A. Bolotin, Olga V. Britanova, Ekaterina V. Putintseva
, Mikhail V. Pogorelyy
, Vadim I. Nazarov
, Ivan V. Zvyagin
, Vitalina I. Kirgizova, Kirill I. Kirgizov, Elena V. Skorobogatova, Dmitry M. Chudakov
:
VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. PLoS Comput. Biol. 11(11) (2015) - 2010
- [j1]Lukas Leder, Wilhelm Stark, Felix Freuler, May Marsh
, Marco Meyerhofer, Thomas Stettler, Lorenz M. Mayr, Olga V. Britanova, Lydia A. Strukova, Dmitry M. Chudakov
, Ekaterina A. Souslova:
The Structure of Ca2+ Sensor Case16 Reveals the Mechanism of Reaction to Low Ca2+ Concentrations. Sensors 10(9): 8143-8160 (2010)
Coauthor Index
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last updated on 2024-08-11 01:07 CEST by the dblp team
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