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Carol J. Bult
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Journal Articles
- 2023
- [j44]Zinaida Perova
, Mauricio Martínez
, Tushar Mandloi, Federico López-Gómez
, Csaba Halmagyi
, Alex Follette, Jeremy C. Mason, Steven Newhauser, Dale A. Begley, Debra M. Krupke, Carol J. Bult
, Helen E. Parkinson
, Tudor Groza
:
PDCM Finder: an open global research platform for patient-derived cancer models. Nucleic Acids Res. 51(D1): 1360-1366 (2023) - 2022
- [j43]Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult
, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden
, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino
, Erin L. Crowgey, Guilherme Del Fiol
, Robert R. Freimuth, Mark A. Hoffman
, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto
, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams:
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29(8): 1342-1349 (2022) - 2021
- [j42]Judith A. Blake
, Richard M. Baldarelli, James A. Kadin, Joel E. Richardson, Cynthia L. Smith
, Carol J. Bult
, Anna V. Anagnostopoulos, Jon S. Beal, Susan M. Bello, Olin Blodgett, Nancy E. Butler, Jeff Campbell, Karen R. Christie, Lori E. Corbani, Mary E. Dolan, Harold J. Drabkin, María Flores, Susan L. Giannatto, Angelina Guerra, Paul Hale, David P. Hill, Jonathan Judd, Meiyee Law, Monica McAndrews, Dave Miers, Cailey Mitchell, Howie Motenko, Li Ni, Hiroaki Onda, Janice Ormsby, Michelle Perry, Jill M. Recla, David R. Shaw, Dmitry Sitnikov, Monika Tomczuk, Laurens G. Wilming, Yunxia Sophia Zhu:
Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology. Nucleic Acids Res. 49(Database-Issue): D981-D987 (2021) - 2020
- [j41]Julie Agapite, Laurent-Philippe Albou
, Suzi A. Aleksander
, Joanna Argasinska
, Valerio Arnaboldi
, Helen Attrill, Susan M. Bello, Judith A. Blake, Olin Blodgett, Yvonne M. Bradford, Carol J. Bult, Scott Cain, Brian R. Calvi, Seth Carbon, Juancarlos Chan, Wen J. Chen, J. Michael Cherry
, Jae-Hyoung Cho, Karen R. Christie, Madeline A. Crosby, Jeff de Pons, Mary E. Dolan, Gilberto dos Santos, Barbara Dunn, Nathan A. Dunn, Anne E. Eagle, Dustin Ebert, Stacia R. Engel, David Fashena, Ken Frazer, Sibyl Gao, Felix Gondwe, Joshua L. Goodman, L. Sian Gramates, Christian A. Grove, Todd W. Harris, Marie-Claire Harrison
, Douglas G. Howe, Kevin L. Howe
, Sagar Jha, James A. Kadin, Thomas C. Kaufman, Patrick Kalita, Kalpana Karra, Ranjana Kishore, Stanley J. F. Laulederkind, Raymond Y. N. Lee, Kevin A. MacPherson, Steven J. Marygold, Beverley Matthews, Gillian H. Millburn, Stuart R. Miyasato, Sierra A. T. Moxon, Hans-Michael Müller, Christopher J. Mungall, Anushya Muruganujan, Tremayne Mushayahama, Robert S. Nash, Patrick Ng, Michael Paulini
, Norbert Perrimon, Christian Pich, Daniela Raciti, Joel E. Richardson, Matthew Russell, Susan Russo Gelbart, Leyla Ruzicka, Kevin Schaper, Mary Shimoyama, Matt Simison, Cynthia L. Smith, David R. Shaw, Ajay Shrivatsav, Marek S. Skrzypek, Jennifer R. Smith, Paul W. Sternberg, Christopher J. Tabone, Paul D. Thomas
, Jyothi Thota, Sabrina Toro, Monika Tomczuk, Marek Tutaj, Monika Tutaj, Jose-Maria Urbano
, Kimberly Van Auken, Ceri E. Van Slyke, Shur-Jen Wang, Shuai Weng, Monte Westerfield, Gary Williams, Edith D. Wong, Adam Wright, Karen Yook:
Alliance of Genome Resources Portal: unified model organism research platform. Nucleic Acids Res. 48(Database-Issue): D650-D658 (2020) - 2019
- [j40]Carol J. Bult
, Judith A. Blake
, Cynthia L. Smith
, James A. Kadin, Joel E. Richardson, The Mouse Genome Database Group:
Mouse Genome Database (MGD) 2019. Nucleic Acids Res. 47(Database-Issue): D801-D806 (2019) - 2018
- [j39]Shashikant Pujar, Nuala A. O'Leary, Catherine M. Farrell, Jane E. Loveland
, Jonathan M. Mudge, Craig Wallin, Carlos García-Girón, Mark Diekhans, If Barnes, Ruth Bennett, Andrew E. Berry, Eric Cox, Claire Davidson, Tamara Goldfarb, Jose M. Gonzalez, Toby Hunt, John Jackson, Vinita S. Joardar, Mike P. Kay, Vamsi K. Kodali, Fergal J. Martin
, Monica McAndrews, Kelly M. McGarvey, Michael R. Murphy, Bhanu Rajput, Sanjida H. Rangwala, Lillian D. Riddick, Ruth L. Seal, Marie-Marthe Suner
, David Webb, Yunxia Sophia Zhu, Bronwen L. Aken, Elspeth A. Bruford
, Carol J. Bult, Adam Frankish, Terence D. Murphy, Kim D. Pruitt:
Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation. Nucleic Acids Res. 46(Database-Issue): D221-D228 (2018) - [j38]Cynthia L. Smith
, Judith A. Blake
, James A. Kadin, Joel E. Richardson, Carol J. Bult, The Mouse Genome Database Group:
Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse. Nucleic Acids Res. 46(Database-Issue): D836-D842 (2018) - 2017
- [j37]Judith A. Blake
, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Cynthia L. Smith, Carol J. Bult, The Mouse Genome Database Group:
Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse. Nucleic Acids Res. 45(Database-Issue): D723-D729 (2017) - 2016
- [j36]Carol J. Bult, Janan T. Eppig, Judith A. Blake
, James A. Kadin, Joel E. Richardson:
Mouse genome database 2016. Nucleic Acids Res. 44(Database-Issue): 840-847 (2016) - 2015
- [j35]Janan T. Eppig, Judith A. Blake
, Carol J. Bult, James A. Kadin, Joel E. Richardson:
The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease. Nucleic Acids Res. 43(Database-Issue): 726-736 (2015) - [j34]Carol J. Bult, Debra M. Krupke
, Dale A. Begley, Joel E. Richardson, Steven B. Neuhauser, John P. Sundberg, Janan T. Eppig:
Mouse Tumor Biology (MTB): a database of mouse models for human cancer. Nucleic Acids Res. 43(Database-Issue): 818-824 (2015) - 2014
- [j33]Darren A. Natale
, Cecilia N. Arighi
, Judith A. Blake
, Carol J. Bult, Karen R. Christie
, Julie Cowart
, Peter D'Eustachio
, Alexander D. Diehl
, Harold J. Drabkin, Olivia Helfer, Hongzhan Huang, Anna Maria Masci
, Jia Ren, Natalia V. Roberts, Karen Ross, Alan Ruttenberg
, Veronica Shamovsky, Barry Smith
, Meher Shruti Yerramalla, Jian Zhang, Aisha AlJanahi
, Irem Çelen, Cynthia Gan, Mengxi Lv, Emily Schuster-Lezell, Cathy H. Wu
:
Protein Ontology: a controlled structured network of protein entities. Nucleic Acids Res. 42(Database-Issue): 415-421 (2014) - [j32]Judith A. Blake
, Carol J. Bult, Janan T. Eppig, James A. Kadin, Joel E. Richardson:
The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res. 42(Database-Issue): 810-817 (2014) - [j31]Stephen C. Grubb, Carol J. Bult, Molly A. Bogue:
Mouse Phenome Database. Nucleic Acids Res. 42(Database-Issue): 825-834 (2014) - 2013
- [j30]Carol J. Bult, Janan T. Eppig, Judith A. Blake
, James A. Kadin, Joel E. Richardson:
The Mouse Genome Database: Genotypes, Phenotypes, and Models of Human Disease. Nucleic Acids Res. 41(Database-Issue): 885-891 (2013) - 2012
- [j29]Janan T. Eppig, Judith A. Blake
, Carol J. Bult, James A. Kadin, Joel E. Richardson:
The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse. Nucleic Acids Res. 40(Database-Issue): 881-886 (2012) - [j28]Terry P. Maddatu, Stephen C. Grubb, Carol J. Bult, Molly A. Bogue:
Mouse Phenome Database (MPD). Nucleic Acids Res. 40(Database-Issue): 887-894 (2012) - [j27]Yuanfang Guan
, Dmitriy Gorenshteyn, Margit Burmeister
, Aaron K. Wong
, John C. Schimenti, Mary Ann Handel, Carol J. Bult, Matthew A. Hibbs, Olga G. Troyanskaya
:
Tissue-Specific Functional Networks for Prioritizing Phenotype and Disease Genes. PLoS Comput. Biol. 8(9) (2012) - 2011
- [j26]Pascale Gaudet, Amos Bairoch
, Dawn Field, Susanna-Assunta Sansone
, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake
, Carol J. Bult, J. Michael Cherry
, Rex L. Chisholm
, Guy Cochrane
, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin
, Robert Gentleman, Carole A. Goble
, Takashi Gojobori, John M. Hancock, Douglas G. Howe
, Tadashi Imanishi
, Janet Kelso
, David Landsman
, Suzanna E. Lewis
, Ilene Karsch-Mizrachi
, Sandra E. Orchard
, B. F. Francis Ouellette
, Shoba Ranganathan
, Lorna J. Richardson
, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan
, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j25]Carol J. Bult, Harold J. Drabkin, Alexei V. Evsikov
, Darren A. Natale
, Cecilia N. Arighi
, Natalia V. Roberts, Alan Ruttenberg
, Peter D'Eustachio
, Barry Smith
, Judith A. Blake
, Cathy H. Wu
:
The Representation of Protein Complexes in the Protein Ontology (PRO). BMC Bioinform. 12: 371 (2011) - [j24]Terrence F. Meehan
, Christopher J. Carr, Jeremy J. Jay
, Carol J. Bult, Elissa J. Chesler, Judith A. Blake
:
Autism candidate genes via mouse phenomics. J. Biomed. Informatics 44(Supplement-1): S5-S11 (2011) - [j23]Pascale Gaudet, Amos Bairoch
, Dawn Field, Susanna-Assunta Sansone
, Chris F. Taylor, Teresa K. Attwood
, Alex Bateman
, Judith A. Blake
, Carol J. Bult, J. Michael Cherry
, Rex L. Chisholm
, Guy Cochrane
, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin
, Robert Gentleman, Carole A. Goble
, Takashi Gojobori, John M. Hancock
, Douglas G. Howe, Tadashi Imanishi
, Janet Kelso
, David Landsman
, Suzanna E. Lewis
, Ilene Karsch-Mizrachi
, Sandra E. Orchard
, B. F. Francis Ouellette, Shoba Ranganathan
, Lorna J. Richardson
, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan
, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - [j22]Darren A. Natale
, Cecilia N. Arighi
, Winona C. Barker, Judith A. Blake
, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D'Eustachio
, Alexei V. Evsikov
, Hongzhan Huang, Jules Nchoutmboube
, Natalia V. Roberts, Barry Smith
, Jian Zhang, Cathy H. Wu
:
The Protein Ontology: a structured representation of protein forms and complexes. Nucleic Acids Res. 39(Database-Issue): 539-545 (2011) - [j21]Judith A. Blake
, Carol J. Bult, James A. Kadin, Joel E. Richardson, Janan T. Eppig:
The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res. 39(Database-Issue): 842-848 (2011) - [j20]Martin Ringwald, Vivek Iyer, Jeremy C. Mason
, Kevin R. Stone, Hamsa D. Tadepally, James A. Kadin, Carol J. Bult, Janan T. Eppig, Darren J. Oakley
, Sebastien Briois, Elia Stupka
, Vincenza Maselli, Damian Smedley, Songyan Liu, Jens Hansen
, Richard A. Baldock
, Geoffrey G. Hicks
, William C. Skarnes:
The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium. Nucleic Acids Res. 39(Database-Issue): 849-855 (2011) - 2010
- [j19]Carol J. Bult, James A. Kadin, Joel E. Richardson, Judith A. Blake
, Janan T. Eppig:
The Mouse Genome Database: enhancements and updates. Nucleic Acids Res. 38(Database-Issue): 586-592 (2010) - 2009
- [j18]Judith A. Blake
, Carol J. Bult, Janan T. Eppig, James A. Kadin, Joel E. Richardson:
The Mouse Genome Database genotypes: : phenotypes. Nucleic Acids Res. 37(Database-Issue): 712-719 (2009) - [j17]Stephen C. Grubb, Terry P. Maddatu, Carol J. Bult, Molly A. Bogue:
Mouse Phenome Database. Nucleic Acids Res. 37(Database-Issue): 720-730 (2009) - 2008
- [j16]Carol J. Bult, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Judith A. Blake
:
The Mouse Genome Database (MGD): mouse biology and model systems. Nucleic Acids Res. 36(Database-Issue): 724-728 (2008) - [j15]Yuanfang Guan
, Chad L. Myers, Rong Lu
, Ihor Lemischka, Carol J. Bult, Olga G. Troyanskaya
:
A Genomewide Functional Network for the Laboratory Mouse. PLoS Comput. Biol. 4(9) (2008) - 2007
- [j14]Janan T. Eppig, Judith A. Blake
, Carol J. Bult, James A. Kadin, Joel E. Richardson:
The mouse genome database (MGD): new features facilitating a model system. Nucleic Acids Res. 35(Database-Issue): 630-637 (2007) - [j13]Dale A. Begley, Debra M. Krupke
, Matthew J. Vincent, John P. Sundberg, Carol J. Bult, Janan T. Eppig:
Mouse Tumor Biology Database (MTB): status update and future directions. Nucleic Acids Res. 35(Database-Issue): 638-642 (2007) - [j12]Molly A. Bogue, Stephen C. Grubb, Terry P. Maddatu, Carol J. Bult:
Mouse Phenome Database (MPD). Nucleic Acids Res. 35(Database-Issue): 643-649 (2007) - 2006
- [j11]Mary E. Dolan
, Constance C. Holden, M. Kate Beard, Carol J. Bult:
Genomes as geography: using GIS technology to build interactive genome feature maps. BMC Bioinform. 7: 416 (2006) - [j10]Judith A. Blake
, Carol J. Bult:
Beyond the data deluge: Data integration and bio-ontologies. J. Biomed. Informatics 39(3): 314-320 (2006) - [j9]Judith A. Blake, Janan T. Eppig, Carol J. Bult, James A. Kadin, Joel E. Richardson:
The Mouse Genome Database (MGD): updates and enhancements. Nucleic Acids Res. 34(Database-Issue): 562-567 (2006) - 2005
- [j8]Janan T. Eppig, Carol J. Bult, James A. Kadin, Joel E. Richardson, Judith A. Blake
:
The Mouse Genome Database (MGD): from genes to mice - a community resource for mouse biology. Nucleic Acids Res. 33(Database-Issue): 471-475 (2005) - 2004
- [j7]Carol J. Bult, Judith A. Blake
, Joel E. Richardson, James A. Kadin, Janan T. Eppig:
The Mouse Genome Database (MGD): integrating biology with the genome. Nucleic Acids Res. 32(Database-Issue): 476-481 (2004) - 2003
- [j6]Judith A. Blake
, Joel E. Richardson, Carol J. Bult, James A. Kadin, Janan T. Eppig:
MGD: the Mouse Genome Database. Nucleic Acids Res. 31(1): 193-195 (2003) - 2002
- [j5]Judith A. Blake, Joel E. Richardson, Carol J. Bult, James A. Kadin, Janan T. Eppig:
The Mouse Genome Database (MGD): the model organism database for the laboratory mouse. Nucleic Acids Res. 30(1): 113-115 (2002) - 2001
- [j4]Judith A. Blake
, Janan T. Eppig, Joel E. Richardson, Carol J. Bult, James A. Kadin:
The Mouse Genome Database (MGD): integration nexus for the laboratory mouse. Nucleic Acids Res. 29(1): 91-94 (2001) - [j3]Carol J. Bult, Debra M. Krupke
, Dieter Näf, John P. Sundberg, Janan T. Eppig:
Web-based access to mouse models of human cancers: the Mouse Tumor Biology (MTB) Database. Nucleic Acids Res. 29(1): 95-97 (2001) - 2000
- [j2]Carol J. Bult, Debra M. Krupke
, John P. Sundberg, Janan T. Eppig:
Mouse Tumor Biology Database (MTB): enhancements and current status. Nucleic Acids Res. 28(1): 112-114 (2000) - 1999
- [j1]Carol J. Bult, Debra M. Krupke
, Janan T. Eppig:
Electronic access to mouse tumor data: the Mouse Tumor Biology Database (MTB) project. Nucleic Acids Res. 27(1): 99-105 (1999)
Conference and Workshop Papers
- 2012
- [c7]Li Ni, Carol J. Bult, James A. Kadin, Joel E. Richardson, Martin Ringwald, Janan T. Eppig, Judith A. Blake:
Using Biomedical Ontologies for Data Representation and Management in the Mouse Genome Informatics (MGI) System. ICBO 2012 - 2011
- [c6]Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Natalia V. Roberts, Alan Ruttenberg, Barry Smith, Jian Zhang, Cathy H. Wu:
Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools. ICBO 2011 - 2010
- [c5]Stacy A. Doore, M. Kate Beard, Carol J. Bult:
An ontology based personal exposure history. IHI 2010: 674-683 - 2008
- [c4]Anna V. Anagnostopoulos, Judith A. Blake
, Carol J. Bult, Martin Ringwald, Joel E. Richardson, James A. Kadin, Janan T. Eppig:
Using bio-ontologies as data annotation, integration & analytical tools at the Mouse Genome Informatics resource. BIBE 2008: 1-7 - 2005
- [c3]Donnie Qi, Judith A. Blake
, James A. Kadin, Joel E. Richardson, Martin Ringwald, Janan T. Eppig, Carol J. Bult:
Data Integration in the Mouse Genome Informatics (MGI) Database. CSB Workshops 2005: 37-38 - 2004
- [c2]Joel E. Richardson, James A. Kadin, Judith A. Blake
, Carol J. Bult, Janan T. Eppig, Martin Ringwald:
From Sipping on a Straw to Drinking from a Fire Hose: Data Integration in a Public Genome Database. ICDE 2004: 795-798 - 2000
- [c1]Carol J. Bult, Joel E. Richardson, Judith A. Blake, James A. Kadin, Martin Ringwald, Janan T. Eppig:
Mouse Genome Informatics in a New Age of Biological Inquiry. BIBE 2000: 29-32
Coauthor Index
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