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2020 – today
- 2023
[j17]Serene W. H. Wong
, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica:
USNAP: fast unique dense region detection and its application to lung cancer. Bioinform. 39(8) (2023)- [j16]Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica:
MirDIP 5.2: tissue context annotation and novel microRNA curation. Nucleic Acids Res. 51(D1): 217-225 (2023) - 2022
- [j15]Giuseppe Agapito, Chiara Pastrello, Yun Niu, Igor Jurisica:
Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture. Briefings Bioinform. 23(5) (2022) - [j14]Tomás Tokár, Chiara Pastrello, Mark Abovsky, Sara Rahmati, Igor Jurisica:
miRAnno - network-based functional microRNA annotation. Bioinform. 38(2): 592-593 (2022) - [j13]Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica:
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. Nucleic Acids Res. 50(D1): 640-647 (2022) - 2021
- [j12]Giuseppe Agapito, Chiara Pastrello, Igor Jurisica:
Comprehensive pathway enrichment analysis workflows: COVID-19 case study. Briefings Bioinform. 22(2): 676-689 (2021) - 2020
- [j11]Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras:
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database J. Biol. Databases Curation 2020 (2020) - [j10]Tomás Tokár, Chiara Pastrello, Igor Jurisica:
GSOAP: a tool for visualization of gene set over-representation analysis. Bioinform. 36(9): 2923-2925 (2020) - [j9]Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro:
BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways. Bioinform. 36(15): 4377-4378 (2020) - [j8]Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica:
pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. Nucleic Acids Res. 48(Database-Issue): D479-D488 (2020) - [p2]Chiara Pastrello, Max Kotlyar, Igor Jurisica:
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID). Protein-Protein Interaction Networks 2020: 125-134
2010 – 2019
- 2019
- [j7]Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica:
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. Nucleic Acids Res. 47(Database-Issue): D581-D589 (2019) - [r3]Max Kotlyar, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica:
Protein-Protein Interaction Databases. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 988-996 - [r2]Anne-Christin Hauschild, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica:
Visualization of Biomedical Networks. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1016-1035 - [r1]Sara Rahmati, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica:
Two Decades of Biological Pathway Databases: Results and Challenges. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1071-1084 - 2018
- [j6]Tomás Tokár, Chiara Pastrello, Andrea E. M. Rossos, Mark Abovsky, Anne-Christin Hauschild, Mike Tsay, Richard Lu, Igor Jurisica:
mirDIP 4.1 - integrative database of human microRNA target predictions. Nucleic Acids Res. 46(Database-Issue): D360-D370 (2018) - [c1]Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica:
SDREGION: Fast Spotting of Changing Communities in Biological Networks. KDD 2018: 867-875 - 2017
- [j5]Sara Rahmati, Mark Abovsky, Chiara Pastrello, Igor Jurisica:
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. Nucleic Acids Res. 45(Database-Issue): D419-D426 (2017) - 2016
- [j4]Andrea Vargas, Marc Angeli, Chiara Pastrello, Rosanne McQuaid, Han Li, Andrea Jurisicova, Igor Jurisica:
Robust quantitative scratch assay. Bioinform. 32(9): 1439-1440 (2016) - [j3]Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica:
Integrated interactions database: tissue-specific view of the human and model organism interactomes. Nucleic Acids Res. 44(Database-Issue): 536-541 (2016) - 2015
- [j2]Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica:
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data. PLoS Comput. Biol. 11(3) (2015) - 2014
- [p1]David Otasek, Chiara Pastrello, Andreas Holzinger, Igor Jurisica:
Visual Data Mining: Effective Exploration of the Biological Universe. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics 2014: 19-33 - 2013
- [j1]Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica:
Visual Data Mining of Biological Networks: One Size Does Not Fit All. PLoS Comput. Biol. 9(1) (2013)
Coauthor Index
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