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Arif Canakoglu
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2020 – today
- 2023
- [j15]Pietro Pinoli
, Arif Canakoglu
, Stefano Ceri
, Matteo Chiara
, Erika Ferrandi
, Luca Minotti, Anna Bernasconi
:
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants. Database J. Biol. Databases Curation 2023 (2023) - [e2]Irena Koprinska
, Paolo Mignone, Riccardo Guidotti
, Szymon Jaroszewicz, Holger Fröning
, Francesco Gullo, Pedro M. Ferreira
, Damian Roqueiro, Gaia Ceddia, Slawomir Nowaczyk
, João Gama
, Rita P. Ribeiro, Ricard Gavaldà
, Elio Masciari
, Zbigniew W. Ras
, Ettore Ritacco, Francesca Naretto, Andreas Theissler, Przemyslaw Biecek
, Wouter Verbeke
, Gregor Schiele
, Franz Pernkopf
, Michaela Blott, Ilaria Bordino, Ivan Luciano Danesi, Giovanni Ponti, Lorenzo Severini, Annalisa Appice
, Giuseppina Andresini
, Ibéria Medeiros, Guilherme Graça
, Lee A. D. Cooper
, Naghmeh Ghazaleh
, Jonas Richiardi
, Diego Saldana Miranda, Konstantinos Sechidis
, Arif Canakoglu, Sara Pidò, Pietro Pinoli, Albert Bifet
, Sepideh Pashami
:
Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2022, Grenoble, France, September 19-23, 2022, Proceedings, Part I. Communications in Computer and Information Science 1752, Springer 2023, ISBN 978-3-031-23617-4 [contents] - [e1]Irena Koprinska
, Paolo Mignone, Riccardo Guidotti
, Szymon Jaroszewicz, Holger Fröning
, Francesco Gullo, Pedro M. Ferreira
, Damian Roqueiro, Gaia Ceddia, Slawomir Nowaczyk
, João Gama
, Rita P. Ribeiro, Ricard Gavaldà
, Elio Masciari
, Zbigniew W. Ras
, Ettore Ritacco, Francesca Naretto, Andreas Theissler, Przemyslaw Biecek
, Wouter Verbeke, Gregor Schiele
, Franz Pernkopf
, Michaela Blott, Ilaria Bordino, Ivan Luciano Danesi, Giovanni Ponti, Lorenzo Severini, Annalisa Appice
, Giuseppina Andresini
, Ibéria Medeiros, Guilherme Graça
, Lee A. D. Cooper
, Naghmeh Ghazaleh
, Jonas Richiardi
, Diego Saldana Miranda, Konstantinos Sechidis
, Arif Canakoglu, Sara Pidò, Pietro Pinoli, Albert Bifet
, Sepideh Pashami
:
Machine Learning and Principles and Practice of Knowledge Discovery in Databases - International Workshops of ECML PKDD 2022, Grenoble, France, September 19-23, 2022, Proceedings, Part II. Communications in Computer and Information Science 1753, Springer 2023, ISBN 978-3-031-23632-7 [contents] - 2022
- [j14]Luca Cilibrasi, Pietro Pinoli
, Anna Bernasconi
, Arif Canakoglu
, Matteo Chiara
, Stefano Ceri
:
ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time. Bioinform. 38(7): 1988-1994 (2022) - [j13]Tommaso Alfonsi
, Anna Bernasconi
, Arif Canakoglu, Marco Masseroli:
Genomic data integration and user-defined sample-set extraction for population variant analysis. BMC Bioinform. 23(1): 401 (2022) - [j12]Pietro Crovari
, Sara Pidò, Pietro Pinoli, Anna Bernasconi
, Arif Canakoglu, Franca Garzotto, Stefano Ceri:
GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis. ACM Trans. Comput. Heal. 3(1): 3:1-3:29 (2022) - [j11]Francisco Cristovao
, Silvia Cascianelli
, Arif Canakoglu
, Mark J. Carman
, Luca Nanni
, Pietro Pinoli
, Marco Masseroli
:
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 121-134 (2022) - [j10]Anna Bernasconi
, Arif Canakoglu
, Marco Masseroli
, Stefano Ceri
:
META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 543-557 (2022) - 2021
- [j9]Anna Bernasconi
, Arif Canakoglu
, Marco Masseroli
, Stefano Ceri
:
The road towards data integration in human genomics: players, steps and interactions. Briefings Bioinform. 22(1): 30-44 (2021) - [j8]Anna Bernasconi
, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri:
A review on viral data sources and search systems for perspective mitigation of COVID-19. Briefings Bioinform. 22(2): 664-675 (2021) - [j7]Arif Canakoglu, Pietro Pinoli, Andrea Gulino, Luca Nanni, Marco Masseroli, Stefano Ceri:
Federated sharing and processing of genomic datasets for tertiary data analysis. Briefings Bioinform. 22(3) (2021) - [j6]Anna Bernasconi
, Luca Cilibrasi
, Ruba Al Khalaf
, Tommaso Alfonsi
, Stefano Ceri
, Pietro Pinoli
, Arif Canakoglu
:
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species. Database J. Biol. Databases Curation 2021 (2021) - [j5]Arif Canakoglu
, Pietro Pinoli
, Anna Bernasconi
, Tommaso Alfonsi, Damianos P. Melidis
, Stefano Ceri
:
ViruSurf: an integrated database to investigate viral sequences. Nucleic Acids Res. 49(Database-Issue): D817-D824 (2021) - [c19]Amirreza Rouhi, Luca Nanni, Arif Canakoglu, Pietro Pinoli, Stefano Ceri:
Ensemble Feature Selection for Single Cell Chromatin Conformation Analysis. ICBBT 2021: 209-216 - 2020
- [c18]Anna Bernasconi
, Arif Canakoglu
, Pietro Pinoli
, Stefano Ceri
:
Empowering Virus Sequence Research Through Conceptual Modeling. ER 2020: 388-402 - [c17]Andrea Gulino, Arif Canakoglu, Stefano Ceri, Danilo Ardagna
:
Performance Prediction for Data-driven Workflows on Apache Spark. MASCOTS 2020: 1-8 - [c16]Giuseppe Cannizzaro, Michele Leone
, Anna Bernasconi
, Arif Canakoglu, Mark J. Carman:
Automated Integration of Genomic Metadata with Sequence-to-Sequence Models. ECML/PKDD (5) 2020: 187-203 - [d1]Fabio Cumbo
, Eleonora Cappelli
, Anna Bernasconi
, Arif Canakoglu
, Stefano Ceri
, Marco Masseroli
, Emanuel Weitschek
:
OpenGDC. Zenodo, 2020
2010 – 2019
- 2019
- [j4]Arif Canakoglu, Anna Bernasconi
, Andrea Colombo, Marco Masseroli, Stefano Ceri:
GenoSurf: metadata driven semantic search system for integrated genomic datasets. Database J. Biol. Databases Curation 2019: baz132 (2019) - [j3]Marco Masseroli
, Arif Canakoglu
, Pietro Pinoli
, Abdulrahman Kaitoua, Andrea Gulino, Olha Horlova
, Luca Nanni, Anna Bernasconi
, Stefano Perna, Eirini Stamoulakatou, Stefano Ceri:
Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data. Bioinform. 35(5): 729-736 (2019) - [j2]Luca Nanni
, Pietro Pinoli
, Arif Canakoglu
, Stefano Ceri:
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets. BMC Bioinform. 20(1): 560:1-560:11 (2019) - [c15]Andrea Gulino, Eirini Stamoulakatou, Arif Canakoglu, Pietro Pinoli
:
Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types. BIBM 2019: 652-655 - [c14]Silvia Cascianelli, Francisco Cristovao, Arif Canakoglu, Mark J. Carman, Luca Nanni, Pietro Pinoli, Marco Masseroli:
Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping. CIBB 2019: 232-244 - [c13]Anna Bernasconi
, Arif Canakoglu, Stefano Ceri:
Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study. ER Workshops 2019: 83-94 - [c12]Anna Bernasconi
, Arif Canakoglu, Stefano Ceri:
From a Conceptual Model to a Knowledge Graph for Genomic Datasets. ER 2019: 352-360 - 2018
- [c11]Arif Canakoglu
, Luca Nanni
, Artur Sokolovsky
, Stefano Ceri
:
Designing and Evaluating Deep Learning Models for Cancer Detection on Gene Expression Data. CIBB 2018: 249-261 - [c10]Stefano Ceri, Arif Canakoglu
, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli
:
Demonstration of GenoMetric Query Language. CIKM 2018: 1887-1890 - [c9]Guray Golcuk
, Mustafa Anil Tuncel
, Arif Canakoglu
:
Exploiting Ladder Networks for Gene Expression Classification. IWBBIO (1) 2018: 270-278 - [c8]Luca Nanni, Pietro Pinoli
, Arif Canakoglu
, Stefano Ceri:
Exploring Genomic Datasets: from Batch to Interactive and Back. ExploreDB@SIGMOD/PODS 2018: 3:1-3:6 - [c7]Anna Bernasconi, Arif Canakoglu, Andrea Colombo, Stefano Ceri:
Ontology-driven metadata enrichment for genomic datasets. SWAT4LS 2018 - 2017
- [c6]Stefano Ceri, Arif Canakoglu
, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli
:
Experiences in the Development of a Data Management System for Genomics. DATA (Revised Selected Papers) 2017: 197-212 - [c5]Stefano Ceri, Arif Canakoglu, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli:
Data-Driven Genomic Computing: Making sense of Signals from the Genome. DAMDID/RCDL 2017: 1-2 - [c4]Stefano Ceri
, Anna Bernasconi
, Arif Canakoglu
, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni
, Pietro Pinoli
:
Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome. DAMDID/RCDL (Selected Papers) 2017: 46-57 - 2016
- [b1]Arif Canakoglu:
Modular schema based data warehousing of evolving, redundant and incomplete data: application to biomolecular knowledge data integration and inference. Polytechnic University of Milan, Italy, 2016 - [j1]Marco Masseroli, Arif Canakoglu
, Stefano Ceri:
Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. 13(2): 209-219 (2016) - [c3]Arif Canakoglu
, Stefano Ceri, Marco Masseroli:
Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge. IWBBIO 2016: 802-813 - 2013
- [c2]Arif Canakoglu
, Marco Masseroli, Stefano Ceri, Luca Tettamanti, Giorgio Ghisalberti, Alessandro Campi
:
Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery. BIBE 2013: 1-4 - 2011
- [c1]Arif Canakoglu
, Giorgio Ghisalberti, Marco Masseroli:
Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery. CIBB 2011: 112-126
Coauthor Index
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last updated on 2024-06-19 21:48 CEST by the dblp team
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