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Journal Articles
- 2024
[j47]Ke Qi
, Shun Wang, Yuyang Xiao, Xiufen Zou:
Mathematical modeling and dynamic analysis for cancer resistance incorporating persister cells. Commun. Nonlinear Sci. Numer. Simul. 134: 107996 (2024)- 2023
- [j46]Juan Shen, Zhihao Yao, Xuewen Tan, Xiufen Zou:
Mathematical Modeling and Dynamical Analysis for Tumor Cells and Tumor Propagating Cells Controlled by G9a Inhibitors. Int. J. Bifurc. Chaos 33(1): 2350006:1-2350006:26 (2023) - 2022
- [j45]Sicheng Li, Shun Wang, Xiufen Zou:
Data-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironment. Comput. Math. Appl. 113: 300-314 (2022) - [j44]Zhijie Ni, Xiaoying Zheng, Xiao Zheng, Xiufen Zou:
scLRTD : A Novel Low Rank Tensor Decomposition Method for Imputing Missing Values in Single-Cell Multi-Omics Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 1144-1153 (2022) - 2021
- [j43]Yu Zhou, Mingzhan Huang, Ying'an Jiang, Xiufen Zou:
Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria. Int. J. Bifurc. Chaos 31(11): 2150163:1-2150163:21 (2021) - [j42]Shun Wang, Mengqian Hao, Zishu Pan, Jinzhi Lei, Xiufen Zou:
Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity among COVID-19 patients. PLoS Comput. Biol. 17(11) (2021) - [j41]Wei Zhang, Yuanyuan Li, Xiufen Zou:
SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-Seq Data. IEEE J. Biomed. Health Informatics 25(1): 247-256 (2021) - [j40]Bo Liu, Fang-Xiang Wu, Xiufen Zou:
scASK: A Novel Ensemble Framework for Classifying Cell Types Based on Single-cell RNA-seq Data. IEEE J. Biomed. Health Informatics 25(8): 3230-3239 (2021) - 2020
- [j39]Dingjie Wang, Wei Yu, Xiufen Zou:
Tensor-based mathematical framework and new centralities for temporal multilayer networks. Inf. Sci. 512: 563-580 (2020) - [j38]Xiao Zheng, Yuan Huang, Xiufen Zou:
scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data. PLoS Comput. Biol. 16(7) (2020) - [j37]Xiaoying Zheng, Suoqin Jin, Qing Nie, Xiufen Zou:
scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes. IEEE Trans. Biomed. Eng. 67(5): 1418-1428 (2020) - [j36]Wei Zhang, Jia Xu, Xiufen Zou:
Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 2053-2061 (2020) - 2019
- [j35]Wei Zheng, Dingjie Wang, Xiufen Zou:
Control of multilayer biological networks and applied to target identification of complex diseases. BMC Bioinform. 20(1): 271:1-271:12 (2019) - [j34]Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou:
Integrating network topology, gene expression data and GO annotation information for protein complex prediction. J. Bioinform. Comput. Biol. 17(1): 1950001:1-1950001:20 (2019) - [j33]Anjing Fan, Haitao Wang, Hua Xiang, Xiufen Zou:
Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition. IEEE ACM Trans. Comput. Biol. Bioinform. 16(6): 1997-2008 (2019) - 2018
- [j32]Suoqin Jin, Dingjie Wang, Xiufen Zou:
Trajectory Control in Nonlinear Networked Systems and Its Applications to Complex Biological Systems. SIAM J. Appl. Math. 78(1): 629-649 (2018) - [j31]Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou:
Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information. IEEE ACM Trans. Comput. Biol. Bioinform. 15(1): 109-116 (2018) - [j30]Wei Zhang, Jia Xu, Yuanyuan Li, Xiufen Zou:
Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information". IEEE ACM Trans. Comput. Biol. Bioinform. 15(3): 1035 (2018) - 2017
- [j29]Dingjie Wang, Xiufen Zou:
Control Energy and controllability of multilayer Networks. Adv. Complex Syst. 20(4-5): 1750008:1-1750008:25 (2017) - [j28]Yu Chen, Dong Chen, Xiufen Zou:
Inference of Biochemical S-Systems via Mixed-Variable Multiobjective Evolutionary Optimization. Comput. Math. Methods Medicine 2017: 3020326:1-3020326:9 (2017) - [j27]Gang Wang, Yuanyuan Li, Xiufen Zou:
Several Indicators of Critical Transitions for Complex Diseases Based on Stochastic Analysis. Comput. Math. Methods Medicine 2017: 7560758:1-7560758:10 (2017) - [j26]Yuewu Liu, Xiufen Zou:
Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization. PLoS Comput. Biol. 13(9) (2017) - 2016
- [j25]Yuanyuan Li, Xiufen Zou:
Identifying disease modules and components of viral infections based on multi-layer networks. Sci. China Inf. Sci. 59(7): 070102:1-070102:15 (2016) - [j24]Gang Wang, Xiufen Zou:
Qualitative Analysis of Critical Transitions in Complex Disease Propagation from a Dynamical Systems Perspective. Int. J. Bifurc. Chaos 26(14): 1650239:1-1650239:18 (2016) - 2015
- [j23]Dingjie Wang, Suoqin Jin, Fang-Xiang Wu, Xiufen Zou:
Estimation of control Energy and control Strategies for Complex Networks. Adv. Complex Syst. 18(7-8): 1550018:1-1550018:23 (2015) - [j22]Jinying Tan, Xiufen Zou:
Optimal Control Strategy for Abnormal Innate Immune Response. Comput. Math. Methods Medicine 2015: 386235:1-386235:16 (2015) - [j21]Suoqin Jin, Lili Niu, Gang Wang, Xiufen Zou:
Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics. Int. J. Bifurc. Chaos 25(7): 1540007:1-1540007:12 (2015) - [j20]Yu Chen, Weicheng Xie, Xiufen Zou:
A binary differential evolution algorithm learning from explored solutions. Neurocomputing 149: 1038-1047 (2015) - [j19]Wenlong Li, Ming Yi, Xiufen Zou:
Mathematical modeling reveals the mechanisms of feedforward regulation in cell fate decisions in budding yeast. Quant. Biol. 3(2): 55-68 (2015) - [j18]Wei Zhang, Xiufen Zou:
A New Method for Detecting Protein Complexes based on the Three Node Cliques. IEEE ACM Trans. Comput. Biol. Bioinform. 12(4): 879-886 (2015) - 2014
- [j17]Yu Chen, Xiufen Zou:
Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts. Inf. Sci. 262: 62-77 (2014) - 2013
- [j16]Suoqin Jin, Xiufen Zou:
Construction of the influenza A virus infection-induced cell-specific inflammatory regulatory network based on mutual information and optimization. BMC Syst. Biol. 7: 105 (2013) - [j15]Wei-Cheng Xie, Xiu-Fen Zou:
A triangulation-based hole patching method using differential evolution. Comput. Aided Des. 45(12): 1651-1664 (2013) - [j14]Jinying Tan, Xiufen Zou:
Complex Dynamical Analysis of a Coupled Network from Innate Immune responses. Int. J. Bifurc. Chaos 23(11) (2013) - [j13]Weicheng Xie, Wei Yu, Xiufen Zou:
Diversity-maintained differential evolution embedded with gradient-based local search. Soft Comput. 17(8): 1511-1535 (2013) - [j12]Yu Chen, Weicheng Xie, Xiufen Zou:
How can surrogates influence the convergence of evolutionary algorithms? Swarm Evol. Comput. 12: 18-23 (2013) - [j11]Wei Zhang, Xiufen Zou:
Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 10(3): 771-779 (2013) - 2012
- [j10]Wei Zhang, Xiufen Zou:
Synchronization ability of coupled cell-cycle oscillators in changing environments. BMC Syst. Biol. 6(S-1): S13 (2012) - [j9]Wei-Cheng Xie, Xiu-Fen Zou, Jian-Dong Yang, Jie-Bin Yang:
Iteration and optimization scheme for the reconstruction of 3D surfaces based on non-uniform rational B-splines. Comput. Aided Des. 44(11): 1127-1140 (2012) - 2011
- [j8]Yu Chen, Xiufen Zou, Jun He:
Drift conditions for estimating the first hitting times of evolutionary algorithms. Int. J. Comput. Math. 88(1): 37-50 (2011) - [j7]Yu Chen, Xiufen Zou, Weicheng Xie:
Convergence of multi-objective evolutionary algorithms to a uniformly distributed representation of the Pareto front. Inf. Sci. 181(16): 3336-3355 (2011) - 2008
- [j6]Xiufen Zou, Minzhong Liu, Zishu Pan:
Robustness analysis of EGFR signaling network with a multi-objective evolutionary algorithm. Biosyst. 91(1): 245-261 (2008) - [j5]Xiufen Zou, Yu Chen, Minzhong Liu, Lishan Kang:
A New Evolutionary Algorithm for Solving Many-Objective Optimization Problems. IEEE Trans. Syst. Man Cybern. Part B 38(5): 1402-1412 (2008) - 2005
- [j4]Xiufen Zou, Lishan Kang:
Fast annealing genetic algorithm for multi-objective optimization problems. Int. J. Comput. Math. 82(8): 931-940 (2005) - 2003
- [j3]Xiufen Zou, Yuanxiang Li, Lishan Kang, Zhijian Wu:
An efficient dynamical evolutionary algorithm for global optimization. Int. J. Comput. Math. 80(11): 1429-1436 (2003) - [j2]Yuanxiang Li, Xiufen Zou, Lishan Kang, Zbigniew Michalewicz:
A New Dynamical Evolutionary Algorithm Based on Statistical Mechanics. J. Comput. Sci. Technol. 18(3): 361-368 (2003) - 1996
- [j1]Yuanxiang Li, Xiufen Zou, Zhangcan Huang:
Use of Multi-scalar Analysis for Building Lattice Models of PDE's. Parallel Algorithms Appl. 9(3-4): 265-272 (1996)
Conference and Workshop Papers
- 2016
- [c13]Jiangyong Wei, Xiaohua Hu, Xiufen Zou, Tianhai Tian:
Inference of genetic regulatory network for stem cell using single cells expression data. BIBM 2016: 217-222 - 2014
- [c12]Yu Chen, Xiufen Zou:
Performance Analysis of a (1+1) Surrogate-Assisted Evolutionary Algorithm. ICIC (1) 2014: 32-40 - 2011
- [c11]Yu Chen, Kai Zhang, Xiufen Zou:
A Population-Based Hybrid Extremal Optimization Algorithm. ICIC (3) 2011: 410-417 - 2010
- [c10]Wei Zhang, Xiufen Zou:
The Data-Based Mathematical Modeling and Parameter Identification in JAK-STAT Signaling Pathway by Using a Hybrid Evolutionary Algorithm. ISICA (1) 2010: 516-522 - 2009
- [c9]Minzhong Liu, Xiufen Zou, Yu Chen, Zhijian Wu:
Performance assessment of DMOEA-DD with CEC 2009 MOEA competition test instances. IEEE Congress on Evolutionary Computation 2009: 2913-2918 - [c8]Rongxiang Yuan, Xiufen Zou, Chunlin Xu:
A parallel evolutionary algorithm for optimal pulse-width modulation technique in power systems. GEC Summit 2009: 725-730 - 2008
- [c7]Chunlin Xu, Xiufen Zou, Rongxiang Yuan, Chuansheng Wu:
Optimal coordination of protection relays using new hybrid evolutionary algorithm. IEEE Congress on Evolutionary Computation 2008: 823-828 - [c6]Chuansheng Wu, Jinrong He, Xiufen Zou:
A Genetic Algorithm approach for selecting Tikhonov regularization parameter. IEEE Congress on Evolutionary Computation 2008: 3980-3983 - 2007
- [c5]Zhuo Kang, Lishan Kang, Xiufen Zou, Minzhong Liu, Changhe Li, Ming Yang, Yan Li, Yuping Chen, Sanyou Zeng:
A New Evolutionary Decision Theory for Many-Objective Optimization Problems. ISICA 2007: 1-11 - [c4]Minzhong Liu, Xiufen Zou, Lishan Kang:
An Effective Dynamical Multi-objective Evolutionary Algorithm for Solving Optimization Problems with High Dimensional Objective Space. ISICA 2007: 80-89 - 2006
- [c3]Xiufen Zou, Yu Chen, Zishu Pan:
Modeling and Optimization of the Specificity in Cell Signaling Pathways Based on a High Performance Multi-objective Evolutionary Algorithm. SEAL 2006: 774-781 - 2004
- [c2]Xiufen Zou, Minzhong Liu, Lishan Kang, Jun He:
A High Performance Multi-objective Evolutionary Algorithm Based on the Principles of Thermodynamics. PPSN 2004: 922-931 - 2002
- [c1]Xiufen Zou, Lishan Kang, Yuanxiang Li:
A dynamical evolutionary algorithm for constrained optimization problems. IEEE Congress on Evolutionary Computation 2002: 890-895
Informal and Other Publications
- 2021
- [i4]Cong Wang, Yu Chen, Jun He, Xiufen Zou:
Influence of the Binomial Crossover on Performance of Randomized Search Heuristics. CoRR abs/2109.14195 (2021) - 2019
- [i3]Yu Chen, Yuanyuan Yang, Yaochu Jin, Xiufen Zou:
Identification of Interaction Clusters Using a Semi-supervised Hierarchical Clustering Method. CoRR abs/1910.08864 (2019) - 2015
- [i2]Yu Chen, Xiufen Zou:
Inferring Gene Regulatory Network Using An Evolutionary Multi-Objective Method. CoRR abs/1512.05055 (2015) - 2014
- [i1]Yu Chen, Weicheng Xie, Xiufen Zou:
A binary differential evolution algorithm learning from explored solutions. CoRR abs/1401.1124 (2014)
Coauthor Index
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