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Books and Theses
- 2019
[b1]Yuansheng Liu:
Data mining for high performance compression of genmoic reads and sequences. University of Technology Sydney, Australia, 2019
Journal Articles
- 2024
- [j49]Yuansheng Liu
, Xinyan Xia, Yongshun Gong, Bosheng Song, Xiangxiang Zeng:
SSR-DTA: Substructure-aware multi-layer graph neural networks for drug-target binding affinity prediction. Artif. Intell. Medicine 157: 102983 (2024) - [j48]Tao Tang, Xiaocai Zhang, Weizhuo Li, Qing Wang, Yuansheng Liu, Xiaofeng Cao:
Co-training based prediction of multi-label protein-protein interactions. Comput. Biol. Medicine 177: 108623 (2024) - [j47]Zehui Chen, Zimeng Li, Xiangzhen Shen, Yuansheng Liu, Xuan Lin, Daojian Zeng, Xiangxiang Zeng:
DualSyn: A dual-level feature interaction method to predict synergistic drug combinations. Expert Syst. Appl. 257: 125065 (2024) - [j46]Yuansheng Liu, Zhenran Zhou, Xiaofeng Cao, Dongsheng Cao, Xiangxiang Zeng:
Effective drug-target affinity prediction via generative active learning. Inf. Sci. 679: 121135 (2024) - [j45]Xiaocai Zhang, Hui Peng, Tao Tang, Yuansheng Liu, Yang Wang, Jianjia Zhang:
Knowledge-based Dual External Attention Network for peptide detectability prediction. Knowl. Based Syst. 286: 111378 (2024) - [j44]Shujie Dong, Yuansheng Liu, Yongshun Gong, Xiangjun Dong, Xiangxiang Zeng:
scCAN: Clustering With Adaptive Neighbor-Based Imputation Method for Single-Cell RNA-Seq Data. IEEE ACM Trans. Comput. Biol. Bioinform. 21(1): 95-105 (2024) - [j43]Yanyan Li, Bosheng Song, Yuansheng Liu, Xiangxiang Zeng, Shengye Huang:
Dynamic threshold spiking neural P systems with weights and multiple channels. Theor. Comput. Sci. 1010: 114697 (2024) - [j42]Xiangzhen Shen, Zimeng Li, Yuansheng Liu, Bosheng Song, Xiangxiang Zeng:
PEB-DDI: A Task-Specific Dual-View Substructural Learning Framework for Drug-Drug Interaction Prediction. IEEE J. Biomed. Health Informatics 28(1): 569-579 (2024) - 2023
- [j41]Tao Tang, Xiaocai Zhang, Yuansheng Liu, Hui Peng, Binshuang Zheng, Yanlin Yin, Xiangxiang Zeng:
Machine learning on protein-protein interaction prediction: models, challenges and trends. Briefings Bioinform. 24(2) (2023) - [j40]Jing Jiang, Junlin Xu, Yuansheng Liu, Bosheng Song, Xiulan Guo, Xiangxiang Zeng, Quan Zou:
Dimensionality reduction and visualization of single-cell RNA-seq data with an improved deep variational autoencoder. Briefings Bioinform. 24(3) (2023) - [j39]Yuansheng Liu, Xiangzhen Shen, Yongshun Gong, Yiping Liu, Bosheng Song, Xiangxiang Zeng:
Sequence Alignment/Map format: a comprehensive review of approaches and applications. Briefings Bioinform. 24(5) (2023) - [j38]Yiping Liu, Xinyi Zhang, Yuansheng Liu, Yansen Su, Xiangxiang Zeng, Gary G. Yen:
Evolutionary Multi-Objective Optimization in Searching for Various Antimicrobial Peptides [Feature]. IEEE Comput. Intell. Mag. 18(2): 31-45 (2023) - [j37]Xixi Yang, Zhangming Niu, Yuansheng Liu, Bosheng Song, Weiqiang Lu, Li Zeng, Xiangxiang Zeng:
Modality-DTA: Multimodality Fusion Strategy for Drug-Target Affinity Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1200-1210 (2023) - 2022
- [j36]Jingxin Dong, Mingyi Zhao, Yuansheng Liu, Yansen Su, Xiangxiang Zeng:
Deep learning in retrosynthesis planning: datasets, models and tools. Briefings Bioinform. 23(1) (2022) - [j35]Bosheng Song, Xiaoyan Luo, Xiaoli Luo, Yuansheng Liu, Zhangming Niu, Xiangxiang Zeng:
Learning spatial structures of proteins improves protein-protein interaction prediction. Briefings Bioinform. 23(2) (2022) - [j34]Yansen Su, Minglu Wang, Pengpeng Wang, Chunhou Zheng, Yuansheng Liu, Xiangxiang Zeng:
Deep learning joint models for extracting entities and relations in biomedical: a survey and comparison. Briefings Bioinform. 23(6) (2022) - [j33]Linlin Zhuo, Bosheng Song, Yuansheng Liu, Zejun Li, Xiangzheng Fu:
Predicting ncRNA-protein interactions based on dual graph convolutional network and pairwise learning. Briefings Bioinform. 23(6) (2022) - [j32]Kedi Zhong, Yuansheng Liu, Jiansuo Yang, Ming Lu, Jun Zhang:
A factor graph optimization mapping based on normaldistributions transform. Turkish J. Electr. Eng. Comput. Sci. 30(3): 1127-1141 (2022) - [j31]Yuansheng Liu:
Multi-information fingerprint identification method based on interactive genetic algorithm. Int. J. Biom. 14(3/4): 352-366 (2022) - [j30]Qingshan Wang, Jun Zhang, Yuansheng Liu, Xinchen Zhang:
High-Precision and Fast LiDAR Odometry and Mapping Algorithm. J. Adv. Comput. Intell. Intell. Informatics 26(2): 206-216 (2022) - 2021
- [j29]Deepthi K., Jereesh A. S., Yuansheng Liu:
A deep learning ensemble approach to prioritize antiviral drugs against novel coronavirus SARS-CoV-2 for COVID-19 drug repurposing. Appl. Soft Comput. 113(Part): 107945 (2021) - [j28]Yu Cheng, Yongshun Gong, Yuansheng Liu, Bosheng Song, Quan Zou:
Molecular design in drug discovery: a comprehensive review of deep generative models. Briefings Bioinform. 22(6) (2021) - [j27]Bosheng Song, Fen Li, Yuansheng Liu, Xiangxiang Zeng:
Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison. Briefings Bioinform. 22(6) (2021) - [j26]Yuansheng Liu, Xiaocai Zhang, Quan Zou, Xiangxiang Zeng:
Minirmd: accurate and fast duplicate removal tool for short reads via multiple minimizers. Bioinform. 37(11): 1604-1606 (2021) - [j25]Xuan Zhang, Yuansheng Liu, Zuguo Yu, Michael Blumenstein, Gyorgy Hutvagner, Jin-Yan Li:
Instance-based error correction for short reads of disease-associated genes. BMC Bioinform. 22-S(6): 142 (2021) - [j24]Nan Ma, Deyi Li, Wen He, Yue Deng, Jiahong Li, Yue Gao, Hong Bao, Huan Zhang, Xin-Kai Xu, Yuansheng Liu, Zhixuan Wu, Li Chen:
Future vehicles: interactive wheeled robots. Sci. China Inf. Sci. 64(5) (2021) - [j23]Xiaocai Zhang, Yi Zheng, Zhixun Zhao, Yuansheng Liu, Michael Blumenstein, Jinyan Li:
Deep learning detection of anomalous patterns from bus trajectories for traffic insight analysis. Knowl. Based Syst. 217: 106833 (2021) - [j22]Yuansheng Liu, Jinyan Li:
Hamming-shifting graph of genomic short reads: Efficient construction and its application for compression. PLoS Comput. Biol. 17(7) (2021) - 2020
- [j21]Yuansheng Liu, Limsoon Wong, Jinyan Li:
Allowing mutations in maximal matches boosts genome compression performance. Bioinform. 36(18): 4675-4681 (2020) - [j20]Yuansheng Liu, Chaowang Lan, Michael Blumenstein, Jinyan Li:
Bi-Level Error Correction for PacBio Long Reads. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 899-905 (2020) - 2019
- [j19]Yuansheng Liu, Zu-Guo Yu, Marcel E. Dinger, Jinyan Li:
Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression. Bioinform. 35(12): 2066-2074 (2019) - [j18]Yuansheng Liu, Leo Yu Zhang, Jinyan Li:
Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers. Bioinform. 35(22): 4560-4567 (2019) - [j17]Xi Han, Xiaolin Zhang, Yuansheng Liu:
Improving GNSS Navigation and Control with Electronic Compass in Unmanned System. J. Adv. Comput. Intell. Intell. Informatics 23(3): 427-436 (2019) - 2018
- [j16]Leo Yu Zhang, Yuansheng Liu, Cong Wang, Jiantao Zhou, Yushu Zhang, Guanrong Chen:
Improved known-plaintext attack to permutation-only multimedia ciphers. Inf. Sci. 430: 228-239 (2018) - [j15]Xiaoxiao Guo, Yuansheng Liu, Qixue Zhong, Mengna Chai:
Research on Moving Target Tracking Algorithm Based on Lidar and Visual Fusion. J. Adv. Comput. Intell. Intell. Informatics 22(5): 593-601 (2018) - [j14]Qixue Zhong, Yuansheng Liu, Xiaoxiao Guo, Lijun Ren:
Dynamic Obstacle Detection and Tracking Based on 3D Lidar. J. Adv. Comput. Intell. Intell. Informatics 22(5): 602-610 (2018) - [j13]Ke Li, Hai Wang, Xiaolong Xu, Yu Du, Yuansheng Liu, M. Omair Ahmad:
A Crowdsensing Based Analytical Framework for Perceptional Degradation of OTT Web Browsing. Sensors 18(5): 1566 (2018) - [j12]Leo Yu Zhang, Yuansheng Liu, Fabio Pareschi, Yushu Zhang, Kwok-Wo Wong, Riccardo Rovatti, Gianluca Setti:
On the Security of a Class of Diffusion Mechanisms for Image Encryption. IEEE Trans. Cybern. 48(4): 1163-1175 (2018) - 2017
- [j11]Yuansheng Liu, Hui Peng, Limsoon Wong, Jinyan Li:
High-speed and high-ratio referential genome compression. Bioinform. 33(21): 3364-3372 (2017) - [j10]Leo Yu Zhang, Yushu Zhang, Yuansheng Liu, Anjia Yang, Guanrong Chen:
Security Analysis of Some Diffusion Mechanisms Used in Chaotic Ciphers. Int. J. Bifurc. Chaos 27(10): 1750155:1-1750155:13 (2017) - [j9]Xiangxiang Zeng, Yuanlu Liao, Yuansheng Liu, Quan Zou:
Prediction and Validation of Disease Genes Using HeteSim Scores. IEEE ACM Trans. Comput. Biol. Bioinform. 14(3): 687-695 (2017) - [j8]Yuansheng Liu, Xiangxiang Zeng, Zengyou He, Quan Zou:
Inferring MicroRNA-Disease Associations by Random Walk on a Heterogeneous Network with Multiple Data Sources. IEEE ACM Trans. Comput. Biol. Bioinform. 14(4): 905-915 (2017) - 2016
- [j7]Li Zeng, Renren Liu, Leo Yu Zhang, Yuansheng Liu, Kwok-Wo Wong:
Cryptanalyzing an image encryption algorithm based on scrambling and Veginère cipher. Multim. Tools Appl. 75(10): 5439-5453 (2016) - 2015
- [j6]Yuansheng Liu, Hua Fan, Eric Yong Xie, Ge Cheng, Chengqing Li:
Deciphering an Image Cipher Based on Mixed Transformed Logistic Maps. Int. J. Bifurc. Chaos 25(13): 1550188:1-1550188:9 (2015) - [j5]Jie Tang, Yuansheng Liu, Zhonghua Wen:
Reliability Evaluation of the Minimum Spanning Tree on Uncertain Graph. J. Comput. 10(1): 45-56 (2015) - 2014
- [j4]Leo Yu Zhang, Xiaobo Hu, Yuansheng Liu, Kwok-Wo Wong, Jie Gan:
A chaotic image encryption scheme owning temp-value feedback. Commun. Nonlinear Sci. Numer. Simul. 19(10): 3653-3659 (2014) - [j3]Chengqing Li, Yuansheng Liu, Leo Yu Zhang, Kwok-Wo Wong:
Cryptanalyzing a class of image encryption schemes based on Chinese remainder theorem. Signal Process. Image Commun. 29(8): 914-920 (2014) - 2013
- [j2]Chengqing Li, Yuansheng Liu, Leo Yu Zhang, Michael Z. Q. Chen:
Breaking a Chaotic Image Encryption Algorithm Based on Modulo Addition and XOR Operation. Int. J. Bifurc. Chaos 23(4) (2013) - 2007
- [j1]Chun Liang, Gang Wang, Lin Liu, Guoli Ji, Yuansheng Liu, Jinqiao Chen, Jason S. Webb, Greg J. Reese, Jeffrey F. D. Dean:
WebTraceMiner: a web service for processing and mining EST sequence trace files. Nucleic Acids Res. 35(Web-Server-Issue): 137-142 (2007)
Conference and Workshop Papers
- 2023
- [c9]Xiaomin Chen, Xi Han, Yuansheng Liu:
Research on Intelligent Monitoring Method of Medicine Delivery Vehicle Based on Internet of Things Technology. DSA 2023: 794-799 - [c8]Ruifeng Wang, Yuansheng Liu, Yongshun Gong, Wei Liu, Meng Chen, Yilong Yin, Yu Zheng:
Fine-grained Urban Flow Inference with Unobservable Data via Space-Time Attraction Learning. ICDM 2023: 1367-1372 - [c7]Xixi Yang, Li Fu, Yafeng Deng, Yuansheng Liu, Dongsheng Cao, Xiangxiang Zeng:
GPMO: Gradient Perturbation-Based Contrastive Learning for Molecule Optimization. IJCAI 2023: 4940-4948 - 2022
- [c6]Zijian Liu, Bingfeng Zhang, Cheng Xu, Yuansheng Liu, Jun Zhang:
Vision localization method for intelligent vehicles in low-texture environments. CIS 2022: 243-247 - 2020
- [c5]Lijun Ren, Yuansheng Liu:
Research on the Application of Semantic Segmentation of driverless vehicles in Park Scene. ISCID 2020: 342-345 - 2019
- [c4]Mengna Chai, Yuansheng Liu:
A Hybrid Loop Closure Detection Method Based on Lidar SLAM. CIS 2019: 301-305 - [c3]Xiaocai Zhang, Xuan Zhang, Sunny Verma, Yuansheng Liu, Michael Blumenstein, Jinyan Li:
Detection of Anomalous Traffic Patterns and Insight Analysis from Bus Trajectory Data. PRICAI (3) 2019: 307-321 - 2018
- [c2]Xiaocai Zhang, Yuansheng Liu, Yi Zheng, Zhixun Zhao, Jinyan Li, Yang Liu:
Distinction Between Ships and Icebergs in SAR Images Using Ensemble Loss Trained Convolutional Neural Networks. Australasian Conference on Artificial Intelligence 2018: 216-223 - 2017
- [c1]Yuanchang Chen, Yizhe Zhu, Fei Qiao, Jie Han, Yuansheng Liu, Huazhong Yang:
Evaluating Data Resilience in CNNs from an Approximate Memory Perspective. ACM Great Lakes Symposium on VLSI 2017: 89-94
Informal and Other Publications
- 2015
- [i9]Yuansheng Liu, Leo Yu Zhang, Jia Wang, Yushu Zhang, Kwok-Wo Wong:
Chosen-plaintext attack of an image encryption scheme based on modified permutation-diffusion structure. CoRR abs/1503.06638 (2015) - [i8]Leo Yu Zhang, Yuansheng Liu, Kwok-Wo Wong, Fabio Pareschi, Yushu Zhang, Riccardo Rovatti, Gianluca Setti:
On the security of a class of diffusion mechanisms for image encryption. CoRR abs/1512.09263 (2015) - 2014
- [i7]Yuansheng Liu, Eric Yong Xie, Ge Cheng, Chengqing Li:
Deciphering a novel image cipher based on mixed transformed Logistic maps. CoRR abs/1404.3600 (2014) - [i6]Li Zeng, Renren Liu, Leo Yu Zhang, Yuansheng Liu, Kwok-Wo Wong:
Cryptanalyzing an image encryption algorithm based on scrambling and Veginere cipher. CoRR abs/1409.4845 (2014) - 2013
- [i5]Leo Yu Zhang, Xiaobo Hu, Yuansheng Liu, Kwok-Wo Wong, Jie Gan:
A chaotic image encryption scheme owning temp-value feedback. CoRR abs/1304.2612 (2013) - [i4]Chengqing Li, Yuansheng Liu, Leo Yu Zhang, Kwok-Wo Wong:
Breaking an image compression and encryption scheme based on Chinese Remainder Theorem. CoRR abs/1306.5615 (2013) - [i3]Yuansheng Liu:
Breaking a RGB image encryption algorithm based on DNA encoding and chaos map. CoRR abs/1307.4279 (2013) - 2012
- [i2]Chengqing Li, Yuansheng Liu, Leo Yu Zhang, Michael Z. Q. Chen:
Breaking a chaotic image encryption algorithm based on modulo addition and XOR operation. CoRR abs/1207.6536 (2012) - [i1]Chengqing Li, Yuansheng Liu, Tao Xie:
Breaking a novel image encryption scheme based on improved hyperchaotic sequences. CoRR abs/1211.3553 (2012)
Coauthor Index
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