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ORCIDChien-Yu Chen 0001
Person information
- affiliation: National Taiwan University, Department of Bio-Industrial Mechatronics Engineering
- unicode name: 陳倩瑜
Other persons with the same name
- Chien-Yu Chen 0002 — China Medical University, Taichung, Taiwan
- Chien-Yu Chen 0003
![[0000-0003-4729-861X]](https://dblp.uni-trier.de/img/orcid-mark.12x12.png "0000-0003-4729-861X")
— National Taiwan University of Science & Technology, Taipei City, Taiwan - Chien-Yu Chen 0004 — University of Arizona, Tucson, AZ, USA
- Chien-Yu Chen 0005 — University of Illinois Urbana-Champaign, IL, USA
- Chien-Yu Chen 0006 — National Chung Cheng University, Department of Computer Science and Information Engineering, Chiayi, Taiwan
- Chien-Yu Chen 0007 — National Taiwan University, Graduate Institute of Communication Engineering, Taipei, Taiwan
- Chien-Yu Chen 0008 — National University of Tainan, Taiwan
- Chien-Yu Chen 0009 — National Tsing Hua University, Department of Materials Science and Engineering, Hsinchu, Taiwan
- Chien-Yu Chen 0010 — National Cheng Kung University, Department of Biomedical Engineering, China
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Journal Articles
- 2022
[j28]Peng-Hsuan Li, Ting-Fu Chen, Jheng-Ying Yu, Shang-Hung Shih, Chan-Hung Su, Yin-Hung Lin, Huai-Kuang Tsai, Hsueh-Fen Juan, Chien-Yu Chen, Jia-Hsin Huang:
pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature. Nucleic Acids Res. 50(W1): 616-622 (2022)- 2021
- [j27]Jun-Liang Lin, Tsung-Ting Hsieh, Yi-An Tung, Xuan-Jun Chen, Yu-Chun Hsiao, Chia-Lin Yang, Tyng-Luh Liu, Chien-Yu Chen:
ezGeno: an automatic model selection package for genomic data analysis. Bioinform. 38(1): 30-37 (2021) - [j26]Ting-Fu Chen, Yu-Chuan Chang, Yi Hsiao, Ko-Han Lee, Yu-Chun Hsiao, Yu-Hsiang Lin, Yi-Chin Ethan Tu, Hsuan-Cheng Huang, Chien-Yu Chen, Hsueh-Fen Juan:
DockCoV2: a drug database against SARS-CoV-2. Nucleic Acids Res. 49(Database-Issue): D1152-D1159 (2021) - 2020
- [j25]Yu-Chuan Chang, June-Tai Wu, Ming-Yi Hong, Yi-An Tung, Ping-Han Hsieh, Sook Wah Yee, Kathleen M. Giacomini, Yen-Jen Oyang, Chien-Yu Chen:
GenEpi: gene-based epistasis discovery using machine learning. BMC Bioinform. 21(1): 68 (2020) - 2013
- [j24]Chih-Kang Lin, Chien-Yu Chen:
PiDNA: predicting protein-DNA interactions with structural models. Nucleic Acids Res. 41(Webserver-Issue): 523-530 (2013) - 2012
- [j23]Mei-Ju May Chen, Lih-Ching Chou, Tsung-Ting Hsieh, Ding-Dar Lee, Kai-Wei Liu, Chi-Yuan Yu, Yen-Jen Oyang, Huai-Kuang Tsai, Chien-Yu Chen:
De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae. Bioinform. 28(5): 701-708 (2012) - [j22]Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Chien-Yu Chen, Darby Tien-Hao Chang:
DBD2BS: connecting a DNA-binding protein with its binding sites. Nucleic Acids Res. 40(Web-Server-Issue): 173-179 (2012) - 2011
- [j21]Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu:
WildSpan: mining structured motifs from protein sequences. Algorithms Mol. Biol. 6: 6 (2011) - 2009
- [j20]Li-Yu Daisy Liu, Chien-Yu Chen, Mei-Ju May Chen, Ming-Shian Tsai, Cho-Han S. Lee, Tzu L. Phang, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Huang-Chun Lien, Shih-Ming Jung, Yi-Shing Lin, King-Jen Chang, Fon-Jou Hsieh:
Statistical identification of gene association by CID in application of constructing ER regulatory network. BMC Bioinform. 10 (2009) - [j19]Darby Tien-Hao Chang, Ting-Ying Chien, Chien-Yu Chen:
seeMotif: exploring and visualizing sequence motifs in 3D structures. Nucleic Acids Res. 37(Web-Server-Issue): 552-558 (2009) - 2008
- [j18]Hsi-Che Liu, Chien-Yu Chen, Yu-Ting Liu, Cheng-Bang Chu, Der-Cherng Liang, Lee-Yung Shih, Chih-Jen Lin:
Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods. J. Biomed. Informatics 41(4): 570-579 (2008) - [j17]Ting-Ying Chien, Darby Tien-Hao Chang, Chien-Yu Chen, Yi-Zhong Weng, Chen-Ming Hsu:
E1DS: catalytic site prediction based on 1D signatures of concurrent conservation. Nucleic Acids Res. 36(Web-Server-Issue): 291-296 (2008) - 2007
- [j16]Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu, Chih-Chang Huang, Min-Hung Laio, Chien-Chieh Lin, Tzung-Lin Wu:
Identification of hot regions in protein-protein interactions by sequential pattern mining. BMC Bioinform. 8(S-5) (2007) - [j15]Chung-Tsai Su, Chien-Yu Chen, Chen-Ming Hsu:
iPDA: integrated protein disorder analyzer. Nucleic Acids Res. 35(Web-Server-Issue): 465-472 (2007) - 2006
- [j14]Chung-Tsai Su, Chien-Yu Chen, Yu-Yen Ou:
Protein disorder prediction by condensed PSSM considering propensity for order or disorder. BMC Bioinform. 7: 319 (2006) - [j13]Chen-Ming Hsu, Chien-Yu Chen, Baw-Jhiune Liu:
MAGIIC-PRO: detecting functional signatures by efficient discovery of long patterns in protein sequences. Nucleic Acids Res. 34(Web-Server-Issue): 356-361 (2006) - [j12]Chien-Yu Chen, Wen-Chin Chung, Chung-Tsai Su:
Exploiting homogeneity in protein sequence clusters for construction of protein family hierarchies. Pattern Recognit. 39(12): 2356-2369 (2006) - [j11]Tsun-Chen Lin, Ru-Sheng Liu, Chien-Yu Chen, Ya-Ting Chao, Shu-Yuan Chen:
Pattern classification in DNA microarray data of multiple tumor types. Pattern Recognit. 39(12): 2426-2438 (2006) - 2005
- [j10]Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang:
Analysis and summarization of correlations in data cubes and its application in microarray data analysis. Intell. Data Anal. 9(1): 43-57 (2005) - [j9]Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang:
A statistics-based approach to control the quality of subclusters in incremental gravitational clustering. Pattern Recognit. 38(12): 2256-2269 (2005) - [j8]Yen-Jen Oyang, Shien-Ching Hwang, Yu-Yen Ou, Chien-Yu Chen, Zhi-Wei Chen:
Data classification with radial basis function networks based on a novel kernel density estimation algorithm. IEEE Trans. Neural Networks 16(1): 225-236 (2005) - 2004
- [j7]Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan:
Incremental generation of summarized clustering hierarchy for protein family analysis. Bioinform. 20(16): 2586-2596 (2004) - [j6]Chien-Yu Chen, Yu-Chuan Kuo, Chiou-Shann Fuh:
Image Reconstruction With Improved Super-Resolution Algorithm. Int. J. Pattern Recognit. Artif. Intell. 18(8): 1513-1527 (2004) - [j5]Darby Tien-Hao Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32(Web-Server-Issue): 76-82 (2004) - 2003
- [j4]Michael O. Ball, Chien-Yu Chen, Zhen-Ying Zhao:
Material compatibility constraints for make-to-order production planning. Oper. Res. Lett. 31(3): 420-428 (2003) - [j3]Chien-Yu Chen, Iwan M. Duursma:
Geometric Reed-Solomon codes of length 64 and 65 over F8. IEEE Trans. Inf. Theory 49(5): 1351-1353 (2003) - 2001
- [j2]Chien-Yu Chen, Zhen-Ying Zhao, Michael O. Ball:
Quantity and Due Date Quoting Available to Promise. Inf. Syst. Frontiers 3(4): 477-488 (2001) - [j1]Chien-Yu Chen, Zhong-Lan Yang, Tu-Chih Wang, Liang-Gee Chen:
A Programmable Parallel VLSI Architecture for 2-D Discrete Wavelet Transform. J. VLSI Signal Process. 28(3): 151-163 (2001)
Conference and Workshop Papers
- 2024
- [c22]Hong-Sheng Lai, Chien-Yu Chen:
Evaluating the Performance of Protein Structure Prediction in Detecting Structural Changes of Pathogenic Nonsynonymous Single Nucleotide Variants. BIOSTEC (1) 2024: 495-503 - 2021
- [c21]Wen-Tse Yang, Dong-Chi Wu, Jen-Feng Liu, Jin-Bon Hong, June-Tai Wu, Pei-Lung Chen, Chien-Yu Chen:
Evaluation of using WGS/WES to characterize ACMG actionable genes in genetic testing reports. BIBM 2021: 1691-1693 - 2020
- [c20]Yu-Cheng Li, Mao-Jan Lin, Xiao-Xuan Huang, Chien-Yu Chen, Yi-Chang Lu:
Comprehensive Study of Keywords for Sequence-Based Automatic Annotation of Protein Functions. BIBE 2020: 23-28 - 2019
- [c19]Kai-Wen Chuang, Chien-Yu Chen:
Predicting Pathogenic Non-coding Variants on Imbalanced Data Set using Cluster Ensemble Sampling. BIBE 2019: 850-855 - 2018
- [c18]Chien-Yu Chen, Jian-Jiun Ding, Chen-Wei Huang:
Advanced Ear Detection Algorithm Using Faster R-CNN, Refocus Filters, and the Gradient Map. DSP 2018: 1-5 - [c17]Chien-Yu Chen, Jian-Jiun Ding, Hung-Wei Hsu, Yih-Cherng Lee:
Advanced Orientation Robust Face Detection Algorithm Using Prominent Features and Hybrid Learning Techniques. VCIP 2018: 1-4 - 2010
- [c16]Chien-Chih Wang, Chien-Yu Chen:
Predicting DNA-binding locations and orientation on proteins using knowledge-based learning of geometric properties. BIBM 2010: 3-8 - [c15]Yi-An Tung, Yu-Ying Chang, Rong-Nan Huang, Chien-Yu Chen:
Sequence composition analysis on arsenic-binding proteins in human cells. BIBM Workshops 2010: 861 - 2007
- [c14]Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Yen Ou, Yen-Jen Oyang:
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction. BIRD 2007: 395-409 - [c13]Yen-Jen Oyang, Darby Tien-Hao Chang, Yu-Yen Ou, Hao-Geng Hung, Chien-Yu Chen:
Prediction of Protein Secondary Structures with a Novel Kernel Density Estimator. MLMTA 2007: 79-84 - 2006
- [c12]Chen-Ming Hsu, Chien-Yu Chen, Ching-Chi Hsu, Baw-Jhiune Liu:
Efficient Discovery of Structural Motifs from Protein Sequences with Combination of Flexible Intra- and Inter-block Gap Constraints. PAKDD 2006: 530-539 - 2005
- [c11]Tsun-Chen Lin, Ru-Sheng Liu, Shu-Yuan Chen, Chen-Chung Liu, Chien-Yu Chen:
Genetic algorithms and silhouette measures applied to microarray data classification. APBC 2005: 229-238 - [c10]Ssu-Hua Huang, Ru-Sheng Liu, Chien-Yu Chen, Ya-Ting Chao, Shu-Yuan Chen:
Prediction of Outer Membrane Proteins by Support Vector Machines Using Combinations of Gapped Amino Acid Pair Compositions. BIBE 2005: 113-120 - 2004
- [c9]Darby Tien-Hao Chang, Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures. BIBE 2004: 427-433 - [c8]Ying-Wen Bai, Wen-Yang Chu, Chien-Yu Chen, Yi-Ting Lee, Yi-Ching Tsai, Cheng-Hung Tsai:
The Combination of Kaiser Window and Moving Average for the Low-Pass Filtering of the Remote ECG Signals. CBMS 2004: 273-278 - 2003
- [c7]Chien-Yu Chen, Hsueh-Fen Juan, Po-Jen Hsiao, Shui-Tein Chen, Hsiang-Wen Tseng, Yen-Jen Oyang:
Design of an incremental clustering package for protein function and family analysis. ISMSE 2003: 288-296 - [c6]Yen-Jen Oyang, Darby Tien-Hao Chang, Chien-Yu Chen, Shien-Ching Hwang:
Expediting protein structural analysis with an efficient kernel density estimation algorithm. ISMSE 2003: 297-304 - [c5]Yu-Yen Ou, Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang:
Expediting model selection for Support Vector Machines based on data reduction. SMC 2003: 786-791 - 2002
- [c4]Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang:
Analysis and summarization of correlations in data cubes. Data Mining and Knowledge Discovery: Theory, Tools, and Technology 2002: 17-28 - [c3]Chien-Yu Chen, Shien-Ching Hwang, Yen-Jen Oyang:
An Incremental Hierarchical Data Clustering Algorithm Based on Gravity Theory. PAKDD 2002: 237-250 - 2001
- [c2]Yen-Jen Oyang, Chien-Yu Chen, Tsui-Wei Yang:
A Study on the Hierarchical Data Clustering Algorithm Based on Gravity Theory. PKDD 2001: 350-361 - 2000
- [c1]Chien-Yu Chen, Zhong-Lan Yang, Tu-Chih Wang, Liang-Gee Chen:
A programmable VLSI architecture for 2-D discrete wavelet transform. ISCAS 2000: 619-622
Informal and Other Publications
- 2024
- [i1]Ping-Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien-Yu Chen, Geir Kjetil Sandve, Tatiana Belova, Marieke L. Kuijjer:
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data. CoRR abs/2405.18655 (2024)
Coauthor Index
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