default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDJoel Arrais
Joel P. Arrais – Joel Perdiz Arrais
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
showing all ?? records
Journal Articles
- 2025
[j36]Tiago O. Pereira, Maryam Abbasi
, Joel P. Arrais:
ABIET: An explainable transformer for identifying functional groups in biological active molecules. Comput. Biol. Medicine 187: 109740 (2025)- [j35]Luis H. M. Torres, Joel P. Arrais, Bernardete Ribeiro:
Rethinking transformers with convolution and graph embeddings for few-shot molecular property discovery. Pattern Recognit. 166: 111657 (2025) - 2024
- [j34]Maryam Abbasi, Filipa G. Carvalho, Bernardete Ribeiro, Joel P. Arrais:
Predicting drug activity against cancer through genomic profiles and SMILES. Artif. Intell. Medicine 150: 102820 (2024) - [j33]Luis H. M. Torres, Bernardete Ribeiro, Joel P. Arrais:
Multi-scale cross-attention transformer via graph embeddings for few-shot molecular property prediction. Appl. Soft Comput. 153: 111268 (2024) - [j32]Nelson R. C. Monteiro, José Luís Oliveira, Joel P. Arrais:
TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers. Expert Syst. Appl. 238(Part F): 122334 (2024) - [j31]Pedro Quesado, Luis H. M. Torres, Bernardete Ribeiro, Joel P. Arrais:
A Hybrid GNN Approach for Improved Molecular Property Prediction. J. Comput. Biol. 31(11): 1146-1157 (2024) - [j30]Luis H. M. Torres, Joel P. Arrais, Bernardete Ribeiro:
Combining graph neural networks and transformers for few-shot nuclear receptor binding activity prediction. J. Cheminformatics 16(1): 109 (2024) - [j29]Daniel Martins, Maryam Abbasi, Conceição Egas, Joel P. Arrais:
Detecting outliers in case-control cohorts for improving deep learning networks on Schizophrenia prediction. J. Integr. Bioinform. 21(2) (2024) - [j28]Fabiano Papaiz, Mario Emílio Teixeira Dourado, Ricardo Alexsandro de Medeiros Valentim, Rafael Pinto, Antonio Higor Freire de Morais, Joel Perdiz Arrais:
Ensemble-imbalance-based classification for amyotrophic lateral sclerosis prognostic prediction: identifying short-survival patients at diagnosis. BMC Medical Informatics Decis. Mak. 24(1): 80 (2024) - 2023
- [j27]Tiago O. Pereira, Maryam Abbasi, Joel P. Arrais:
Enhancing reinforcement learning for de novo molecular design applying self-attention mechanisms. Briefings Bioinform. 24(6) (2023) - [j26]Nelson R. C. Monteiro, Tiago Pereira, Ana Catarina D. Machado, José Luís Oliveira, Maryam Abbasi, Joel P. Arrais:
FSM-DDTR: End-to-end feedback strategy for multi-objective De Novo drug design using transformers. Comput. Biol. Medicine 164: 107285 (2023) - [j25]Luis H. M. Torres, Bernardete Ribeiro, Joel P. Arrais:
Few-shot learning with transformers via graph embeddings for molecular property prediction. Expert Syst. Appl. 225: 120005 (2023) - [j24]Tiago O. Pereira, Maryam Abbasi, Rita I. Oliveira, Romina A. Guedes, Jorge A. R. Salvador, Joel P. Arrais:
Artificial intelligence for prediction of biological activities and generation of molecular hits using stereochemical information. J. Comput. Aided Mol. Des. 37(12): 791-806 (2023) - [j23]Luis H. M. Torres, Joel P. Arrais, Bernardete Ribeiro:
Few-shot learning via graph embeddings with convolutional networks for low-data molecular property prediction. Neural Comput. Appl. 35(18): 13167-13185 (2023) - 2022
- [j22]António Cruz, Joel P. Arrais, Penousal Machado:
Multivariate Data Exploration Through Coordinated Views. IEEE Access 10: 78788-78817 (2022) - [j21]António Cruz, Joel P. Arrais, Penousal Machado:
Force-Directed Timelines: Visualizing & Exploring Temporal Patterns. Big Data Res. 27: 100291 (2022) - [j20]Tiago Pereira, Maryam Abbasi, Rita I. Oliveira, Romina A. Guedes, Jorge A. R. Salvador, Joel P. Arrais:
Deep generative model for therapeutic targets using transcriptomic disease-associated data - USP7 case study. Briefings Bioinform. 23(4) (2022) - [j19]Nelson R. C. Monteiro, Carlos J. V. Simões, Henrique V. Ávila, Maryam Abbasi, José Luís Oliveira, Joel P. Arrais:
Explainable deep drug-target representations for binding affinity prediction. BMC Bioinform. 23(1): 237 (2022) - [j18]Nelson R. C. Monteiro, José Luís Oliveira, Joel P. Arrais:
DTITR: End-to-end drug-target binding affinity prediction with transformers. Comput. Biol. Medicine 147: 105772 (2022) - [j17]Fabiano Papaiz, Mario Emílio Teixeira Dourado, Ricardo Alexsandro de Medeiros Valentim, Antonio Higor Freire de Morais, Joel Perdiz Arrais:
Machine Learning Solutions Applied to Amyotrophic Lateral Sclerosis Prognosis: A Review. Frontiers Comput. Sci. 4: 869140 (2022) - [j16]Maryam Abbasi, Beatriz P. Santos, Tiago C. Pereira, Raul Sofia, Nelson R. C. Monteiro, Carlos J. V. Simões, Rui M. M. Brito, Bernardete Ribeiro, José Luís Oliveira, Joel P. Arrais:
Designing optimized drug candidates with Generative Adversarial Network. J. Cheminformatics 14(1): 40 (2022) - [j15]Maryam Abbasi, Beatriz P. Santos, Tiago C. Pereira, Raul Sofa, Nelson R. C. Monteiro, Carlos J. V. Simões, Rui M. M. Brito, Bernardete Ribeiro, José Luís Oliveira, Joel P. Arrais:
Correction to: Designing optimized drug candidates with Generative Adversarial Network. J. Cheminformatics 14(1): 53 (2022) - 2021
- [j14]Tiago Pereira, Maryam Abbasi, José Luís Oliveira, Bernardete Ribeiro, Joel Arrais:
Optimizing blood-brain barrier permeation through deep reinforcement learning for de novo drug design. Bioinform. 37(Supplement): 84-92 (2021) - [j13]Tiago Pereira, Maryam Abbasi, Bernardete Ribeiro, Joel P. Arrais:
Diversity oriented Deep Reinforcement Learning for targeted molecule generation. J. Cheminformatics 13(1): 21 (2021) - [j12]Nelson R. C. Monteiro, Bernardete Ribeiro, Joel P. Arrais:
Drug-Target Interaction Prediction: End-to-End Deep Learning Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2364-2374 (2021) - 2020
- [j11]António Cruz, Penousal Machado, Joel P. Arrais:
CroP - Coordinated Panel visualization for biological networks analysis. Bioinform. 36(4): 1298-1299 (2020) - [j10]Pedro Lucas, Jorge Sá Silva, Filipe Araújo, Catarina Silva, Paulo Gil, Joel P. Arrais, Daniel Coutinho, Pedro D. Salgueiro, Luís Miguel Rato, José Saias, Vítor Nogueira, Alberto Cardoso, Bernardete Ribeiro:
NanoSen-AQM: From Sensors to Users. Int. J. Online Biomed. Eng. 16(4): 51-62 (2020) - 2019
- [j9]António Cruz, Joel P. Arrais, Penousal Machado:
Interactive and coordinated visualization approaches for biological data analysis. Briefings Bioinform. 20(4): 1513-1523 (2019) - 2016
- [j8]Siddhartha Jain, Joel Arrais, Narasimhan J. Venkatachari, Velpandi Ayyavoo, Ziv Bar-Joseph:
Reconstructing the temporal progression of HIV-1 immune response pathways. Bioinform. 32(12): 253-261 (2016) - [j7]Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction. PLoS Comput. Biol. 12(11) (2016) - 2015
- [j6]Edgar D. Coelho, André M. Santiago, Joel P. Arrais, José Luís Oliveira:
Computational methodology for predicting the landscape of the human-microbial interactome region level influence. J. Bioinform. Comput. Biol. 13(5): 1550023:1-1550023:18 (2015) - 2014
- [j5]Miguel Reboiro-Jato, Joel Arrais, José Luís Oliveira, Florentino Fdez-Riverola:
geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification. BMC Bioinform. 15: 31 (2014) - [j4]Edgar D. Coelho, Joel Arrais, Sérgio Matos, Carlos Pereira, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Computational prediction of the human-microbial oral interactome. BMC Syst. Biol. 8: 24 (2014) - 2010
- [j3]Sérgio Matos, Joel Arrais, João Maia-Rodrigues, José Luís Oliveira:
Concept-based query expansion for retrieving gene related publications from MEDLINE. BMC Bioinform. 11: 212 (2010) - [j2]Joel Arrais, João Fernandes, João E. Pereira, José Luís Oliveira:
GeneBrowser 2: an application to explore and identify common biological traits in a set of genes. BMC Bioinform. 11: 389 (2010) - 2007
- [j1]Joel Arrais, Bruno Santos, João Fernandes, Laura Carreto, Manuel A. S. Santos, José Luís Oliveira:
GeneBrowser: an approach for integration and functional classification of genomics data. J. Integr. Bioinform. 4(3) (2007)
Conference and Workshop Papers
- 2023
- [c40]Luis H. M. Torres, Bernardete Ribeiro, Joel Arrais:
Convolutional Transformer via Graph Embeddings for Few-shot Toxicity and Side Effect Prediction. ESANN 2023 - [c39]Adriano Durao, Joel P. Arrais, Bernardete Ribeiro, Gabriel Falcao:
On the Quantization of Recurrent Neural Networks for Smiles Generation. ICASSP 2023: 1-5 - [c38]Daniel Martins, Conceição Egas, Joel P. Arrais:
The Impact of Schizophrenia Misdiagnosis Rates on Machine Learning Models Performance. PACBB 2023: 3-13 - 2022
- [c37]Filipa G. Carvalho, Maryam Abbasi, Bernardete Ribeiro, Joel P. Arrais:
Deep Model for Anticancer Drug Response through Genomic Profiles and Compound Structures. CBMS 2022: 1-6 - 2021
- [c36]Beatriz P. Santos, Maryam Abbasi, Tiago Pereira, Bernardete Ribeiro, Joel P. Arrais:
Optimizing Recurrent Neural Network Architectures for De Novo Drug Design. CBMS 2021: 172-177 - [c35]Renato Santos, Joel P. Arrais, Paula Alexandra Silva:
Analysing Games for Health through Users' Opinion Mining. CBMS 2021: 319-323 - [c34]Maryam Abbasi, Tiago Pereira, Beatriz P. Santos, Bernardete Ribeiro, Joel Arrais:
Multiobjective Reinforcement Learning in Optimized Drug Design. ESANN 2021 - [c33]Miguel Fernandes, Catarina Silva, Joel Arrais, Alberto Cardoso, Bernardete Ribeiro:
Decay Momentum for Improving Federated Learning. ESANN 2021 - [c32]Beatriz P. Santos, Maryam Abbasi, Tiago Pereira, Bernardete Ribeiro, Joel Arrais:
Improvement on Generative Adversarial Network for Targeted Drug Design. ESANN 2021 - [c31]Débora Antunes, Daniel Martins, Fernanda Correia, Miguel Rocha, Joel P. Arrais:
Computational Methods for the Identification of Genetic Variants in Complex Diseases. PACBB 2021: 1-10 - 2020
- [c30]Luis H. M. Torres, Nelson R. C. Monteiro, José Luís Oliveira, Joel Arrais, Bernardete Ribeiro:
Exploring a Siamese Neural Network Architecture for One-Shot Drug Discovery. BIBE 2020: 168-175 - [c29]Luís Silva, Carlos Pereira, Joel P. Arrais:
Using a Novel Unbiased Dataset and Deep Learning Architectures to Predict Protein-Protein Interactions. BIBM 2020: 213-216 - [c28]Tiago Oliveira Pereira, Maryam Abbasi, Bernardete Ribeiro, Joel P. Arrais:
End-to-end Deep Reinforcement Learning for Targeted Drug Generation. ICCBB 2020: 7-13 - [c27]António Cruz, Joel P. Arrais, Penousal Machado:
Exploring Time-Series Through Force-Directed Timelines. IV 2020: 328-335 - 2019
- [c26]Jorge Sá Silva, Pedro Lucas, Filipe Araújo, Catarina Silva, Paulo Gil, Alberto Cardoso, Joel Arrais, Bernardete Ribeiro, Daniel Coutinho, Pedro D. Salgueiro, Luís Miguel Rato, José Saias, Vítor Nogueira:
A Hybrid Application for Real-Time Air Quality Monitoring. exp.at 2019: 270-271 - [c25]Jorge Sá Silva, Pedro Lucas, Filipe Araújo, Catarina Silva, Paulo Gil, Alberto Cardoso, Joel Arrais, Bernardete Ribeiro, Daniel Coutinho, Pedro D. Salgueiro, Luís Miguel Rato, José Saias, Vítor Nogueira:
An Online Platform For Real-Time Air Quality Monitoring. exp.at 2019: 320-325 - [c24]Nelson R. C. Monteiro, Bernardete Ribeiro, Joel P. Arrais:
Deep Neural Network Architecture for Drug-Target Interaction Prediction. ICANN (Workshop) 2019: 804-809 - 2018
- [c23]António Cruz, Joel P. Arrais, Penousal Machado:
Interactive Network Visualization of Gene Expression Time-Series Data. IV 2018: 574-580 - [c22]Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Fighting Fire with Fire: Computational Prediction of Microbial Targets for Bacteriocins. IWBBIO (1) 2018: 221-234 - 2017
- [c21]Evgheni Polisciuc, António Cruz, Penousal Machado, Joel P. Arrais:
On the role of aesthetics in genetic algorithms applied to graph drawing. GECCO (Companion) 2017: 1713-1720 - [c20]André M. Santiago, Miguel Rocha, António Dourado, Joel P. Arrais:
Mixed-Integer Programming Model for Profiling Disease Biomarkers from Gene Expression Studies. IWBBIO (2) 2017: 50-61 - 2016
- [c19]Fernanda Brito Correia, Joel P. Arrais, José Luís Oliveira:
Prediction of Cancer using Network Topological Features. BIOINFORMATICS 2016: 207-215 - [c18]Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Ensemble-Based Methodology for the Prediction of Drug-Target Interactions. CBMS 2016: 36-41 - 2015
- [c17]Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions. EMBC 2015: 3254-3257 - 2014
- [c16]Pedro Barbosa, Oscar Dias, Joel P. Arrais, Miguel Rocha:
Metagenomic Analysis of the Saliva Microbiome with Merlin. PACBB 2014: 191-199 - 2013
- [c15]Edgar D. Coelho, Joel Arrais, Sérgio Matos, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Computational Approach to Predict Inter-Species Oral Protein-Protein Interactions. IWBBIO 2013: 193-194 - [c14]Andre Vechina, Joel Arrais, José Luís Oliveira:
Representation of Semantic Networks of Biomedical Terms. IWBBIO 2013: 703-710 - [c13]Fernanda Correia Barbosa, Joel P. Arrais, José Luís Oliveira:
Quantitative Characterization of Protein Networks of the Oral Cavity. PACBB 2013: 61-68 - 2012
- [c12]José Melo, Joel Arrais, Pedro Lopes, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Web Information System for the Study of Oral Health. HEALTHINF 2012: 97-105 - [c11]José Melo, Joel P. Arrais, Edgar D. Coelho, Pedro Lopes, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology. BIOSTEC (Selected Papers) 2012: 401-412 - 2011
- [c10]Joel Arrais, Pedro Lopes, José Luís Oliveira:
Challenges Storing and Representing Biomedical Data. USAB 2011: 53-62 - 2010
- [c9]Sérgio Matos, Joel Arrais, José Luís Oliveira:
Expanding Gene-Based PubMed Queries. IWPACBB 2010: 61-68 - [c8]Joel Arrais, João E. Pereira, Pedro Lopes, Sérgio Matos, José Luís Oliveira:
Improving Cross Mapping in Biomedical Databases. IWPACBB 2010: 69-76 - 2009
- [c7]Pedro Lopes, Joel Arrais, José Luís Oliveira:
Link Integrator - A Link-based Data Integration Architecture. KDIR 2009: 274-277 - [c6]Pedro Lopes, Joel Arrais, José Luís Oliveira:
DynamicFlow: A Client-Side Workflow Management System. IWANN (2) 2009: 1101-1108 - 2008
- [c5]Joel Arrais, Laura Carreto, Manuel A. S. Santos, José Luís Oliveira:
A Microarray Information Database. BIOTECHNO 2008: 170-175 - [c4]Pedro Lopes, Joel Arrais, José Luís Oliveira:
Dynamic service integration using web-based workflows. iiWAS 2008: 622-625 - [c3]Joel Arrais, João G. L. M. Rodrigues, José Luís Oliveira:
Improving Literature Searches in Gene Expression Studies. IWPACBB 2008: 74-82 - 2006
- [c2]Daniel Ferreira Polónia, Joel Arrais, José Luís Oliveira:
A Prospective Study on the Integration of Microarray Data in HIS/EPR. ISBMDA 2006: 231-239 - 2004
- [c1]Valery Sklyarov, Iouliia Skliarova, Bruno Figueiredo Pimentel, Joel Arrais:
Hardware/Software Implementation of FPGA-Targeted Matrix-Oriented SAT Solvers. FPL 2004: 922-926
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2025-06-17 00:02 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
