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ORCIDHeng Li 0002
Person information
- affiliation: Broad Institute of Harvard and MIT, Medical Population Genetics Program, Cambridge, MA, USA
- affiliation (former): Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
- affiliation (former): Chinese Academy of Sciences, Beijing Genomics Institute, China
Other persons with the same name
- Heng Li — disambiguation page
- Heng Li 0001
![[0000-0002-3187-9041]](https://dblp.uni-trier.de/img/orcid-mark.12x12.png "0000-0002-3187-9041")
— Hong Kong Polytechnic University, Department of Building and Real Estate, Hong Kong - Heng Li 0003 — The University of Texas M. D. Anderson Cancer Center, Department of Radiation Physics, Houston, TX, USA
- Heng Li 0004 — Beijing Institute of Technology, School of Optoelectronics, China
- Heng Li 0005 — Central South University, School of Information Science and Engineering, Changsha, China (and 1 more)
- Heng Li 0006 — Shanghai Jiao Tong University, School of Biomedical Engineering, China
- Heng Li 0007 — Polytechnique Montreal, Department of Computer and Software Engineering, Montreal, Quebec, Canada (and 1 more)
- Heng Li 0008 — Huazhong University of Science and Technology, Wuhan, China
- Heng Li 0009 — Simon Fraser University, Burnaby, BC, Canada
- Heng Li 0010 — Southern University of Science and Technology, Department of Computer Science and Engineering, Research Institute of Trustworthy Autonomous Systems, China
- Heng Li 0011 — China University of Geosciences in Beijing, School of Information Engineering, China
- Heng Li 0012 — Nanjing University of Science and Technology, School of Computer Science and Engineering, China
- Heng Li 0013 — Harbin Institute of Technology, School of Electronic and Information Engineering, Shenzhen, China
- Heng Li 0014 — Harbin Institute of Technology, Harbin, China
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Journal Articles
- 2021
[j26]Heng Li, Jiazhen Rong:
Bedtk: finding interval overlap with implicit interval tree. Bioinform. 37(9): 1315-1316 (2021)- [j25]Heng Li:
New strategies to improve minimap2 alignment accuracy. Bioinform. 37(23): 4572-4574 (2021) - [j24]Haowen Zhang, Haoran Li, Chirag Jain, Haoyu Cheng, Kin Fai Au, Heng Li, Srinivas Aluru:
Real-time mapping of nanopore raw signals. Bioinform. 37(Supplement): 477-483 (2021) - 2020
- [j23]Shilpa Garg, John Aach, Heng Li, Isaac Sebenius, Richard Durbin, George M. Church:
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph. Bioinform. 36(8): 2385-2392 (2020) - 2019
- [j22]Heng Li:
Identifying centromeric satellites with dna-brnn. Bioinform. 35(21): 4408-4410 (2019) - 2016
- [j21]Heng Li:
BGT: efficient and flexible genotype query across many samples. Bioinform. 32(4): 590-592 (2016) - [j20]Heng Li:
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Bioinform. 32(14): 2103-2110 (2016) - 2015
- [j19]Heng Li:
BFC: correcting Illumina sequencing errors. Bioinform. 31(17): 2885-2887 (2015) - [j18]Heng Li:
FermiKit: assembly-based variant calling for Illumina resequencing data. Bioinform. 31(22): 3694-3696 (2015) - 2014
- [j17]Heng Li:
Toward better understanding of artifacts in variant calling from high-coverage samples. Bioinform. 30(20): 2843-2851 (2014) - [j16]Heng Li:
Fast construction of FM-index for long sequence reads. Bioinform. 30(22): 3274-3275 (2014) - 2012
- [j15]Heng Li:
Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly. Bioinform. 28(14): 1838-1844 (2012) - 2011
- [j14]Heng Li:
Tabix: fast retrieval of sequence features from generic TAB-delimited files. Bioinform. 27(5): 718-719 (2011) - [j13]Heng Li:
Improving SNP discovery by base alignment quality. Bioinform. 27(8): 1157-1158 (2011) - [j12]Heng Li:
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinform. 27(21): 2987-2993 (2011) - 2010
- [j11]Heng Li, Nils Homer:
A survey of sequence alignment algorithms for next-generation sequencing. Briefings Bioinform. 11(5): 473-483 (2010) - [j10]Heng Li, Richard Durbin:
Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinform. 26(5): 589-595 (2010) - [j9]Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong:
Evolutionary Transients in the Rice Transcriptome. Genom. Proteom. Bioinform. 8(4): 211-228 (2010) - 2009
- [j8]Heng Li, Richard Durbin:
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinform. 25(14): 1754-1760 (2009) - [j7]Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill:
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinform. 25(16): 2074-2075 (2009) - [j6]Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor T. Marth, Gonçalo R. Abecasis, Richard Durbin:
The Sequence Alignment/Map format and SAMtools. Bioinform. 25(16): 2078-2079 (2009) - 2008
- [j5]Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan, Lachlan James M. Coin, Yiran Guo, Jean-Karim Hériché, Yafeng Hu, Karsten Kristiansen, Ruiqiang Li, Tao Liu, Alan Moses, Junjie Qin, Søren Vang, Albert J. Vilella, Abel Ureta-Vidal, Lars Bolund, Jun Wang, Richard Durbin:
TreeFam: 2008 Update. Nucleic Acids Res. 36(Database-Issue): 735-740 (2008) - 2007
- [j4]Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Zheng, Gane Ka-Shu Wong, Jun Wang:
A cross-species alignment tool (CAT). BMC Bioinform. 8 (2007) - [j3]Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiansen, Lars Bolund, Jun Wang:
PigGIS: Pig Genomic Informatics System. Nucleic Acids Res. 35(Database-Issue): 654-657 (2007) - [j2]Shengting Li, Lijia Ma, Heng Li, Søren Vang, Yafeng Hu, Lars Bolund, Jun Wang:
Snap: an integrated SNP annotation platform. Nucleic Acids Res. 35(Database-Issue): 707-710 (2007) - 2006
- [j1]Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir Dehal, Jun Wang, Richard Durbin:
TreeFam: a curated database of phylogenetic trees of animal gene families. Nucleic Acids Res. 34(Database-Issue): 572-580 (2006)
Conference and Workshop Papers
- 2019
- [c1]Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru:
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems. IPDPS 2019: 314-324
Informal and Other Publications
- 2019
- [i2]Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru:
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems. CoRR abs/1907.12931 (2019) - 2014
- [i1]Heng Li:
Fast construction of FM-index for long sequence reads. CoRR abs/1406.0426 (2014)
Coauthor Index
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