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2020 – today
- 2024
[i2]Marcin P. Joachimiak, Mark A. Miller, J. Harry Caufield, Ryan Ly, Nomi L. Harris
, Andrew J. Tritt, Christopher J. Mungall, Kristofer E. Bouchard:
The Artificial Intelligence Ontology: LLM-assisted construction of AI concept hierarchies. CoRR abs/2404.03044 (2024)- 2021
- [j6]Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.:
Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021) - [j5]Prasad Calyam, Nancy Wilkins-Diehr, Mark A. Miller, Emre H. Brookes, Ritu Arora, Amit Chourasia, Douglas M. Jennewein, Viswanath Nandigam, M. Drew LaMar, Sean B. Cleveland, Greg Newman, Shaowen Wang, Ilya Zaslavsky, Michael A. Cianfrocco, Kevin M. Ellett, David Tarboton, Keith G. Jeffery, Zhiming Zhao, Juan González-Aranda, Mark J. Perri, Gregory E. Tucker, Leonardo Candela, Tamás Kiss, Sandra Gesing:
Measuring success for a future vision: Defining impact in science gateways/virtual research environments. Concurr. Comput. Pract. Exp. 33(19) (2021) - [c22]William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall:
Leveraging Ontologies within the National Microbiome Data Collaborative. ICBO 2021: 141-143 - [c21]Mark A. Miller, Rebecca C. Jackson, Christopher J. Mungall:
Bringing Schemas to the Schemaless. ICBO 2021: 144-147 - 2020
- [c20]Hayden Freedman, Mark A. Miller, Heather Williams, Christian J. Stoeckert Jr.:
Scaling and Querying a Semantically Rich, Electronic Healthcare Graph. ICBO/ODLS 2020: 1-11 - [c19]Mark A. Miller, Hayden Freedman, Christian J. Stoeckert Jr.:
A Robust, Self-Training Classifier for Medication Strings, with Quantitative and Semantic Confidence Metrics. ICBO/ODLS 2020: 1-12
2010 – 2019
- 2019
- [c18]Mark A. Miller, Christian J. Stoeckert Jr.:
A Collaborative, Realism-Based, Electronic Healthcare Graph: Public Data, Common Data Models, and Practical Instantiation. ICBO 2019: 1-10 - [c17]Kenneth Yoshimoto, Nicholas T. Carnevale, Subhashini Sivagnanam, Amitava Majumdar, Mark A. Miller:
Web of Trust Tool for Gateway User Vetting. PEARC 2019: 26:1-26:5 - 2018
- [c16]Christian J. Stoeckert Jr., David L. Birtwell, Hayden Freedman, Mark A. Miller, Heather Williams:
Transforming and Unifying Research with Biomedical Ontologies: The Penn TURBO Project. ICBO 2018 - [c15]Marlon E. Pierce, Mark A. Miller, Emre H. Brookes, Mona Wong, Yan Liu, Enis Afgan, Sandra Gesing, Maytal Dahan, Suresh Marru, Tony Walker:
Towards a Science Gateway Reference Architecture. IWSG 2018 - 2017
- [j4]Ignazio Carbone, James B. White, Jolanta Miadlikowska, A. Elizabeth Arnold, Mark A. Miller:
T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life. Bioinform. 33(8): 1160-1168 (2017) - [c14]Supun Nakandala, Suresh Marru, Marlon E. Pierce, Sudhakar Pamidighantam, Kenneth Yoshimoto, Terri Schwartz, Subhashini Sivagnanam, Amitava Majumdar, Mark A. Miller:
Apache Airavata Sharing Service: A Tool for Enabling User Collaboration in Science Gateways. PEARC 2017: 20:1-20:8 - 2016
- [c13]Mark A. Miller, Terri Schwartz, Wayne Pfeiffer:
User behavior and usage patterns for a highly accessed science gateway. XSEDE 2016: 46:1-46:8 - [i1]Daniel S. Katz, Sou-Cheng T. Choi, Kyle E. Niemeyer, James Hetherington, Frank Löffler, Dan Gunter, Ray Idaszak, Steven R. Brandt, Mark A. Miller, Sandra Gesing, Nick D. Jones, Nic Weber, Suresh Marru, Gabrielle Allen, Birgit Penzenstadler, Colin C. Venters, Ethan Davis, Lorraine J. Hwang, Ilian T. Todorov, Abani K. Patra, Miguel de Val-Borro:
Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3). CoRR abs/1602.02296 (2016) - 2015
- [c12]Mark A. Miller, Terri Schwartz, Paul Hoover, Kenneth Yoshimoto, Subhashini Sivagnanam, Amitava Majumdar:
The CIPRES workbench: a flexible framework for creating science gateways. XSEDE 2015: 39:1-39:8 - 2013
- [c11]Suresh Marru, Rion Dooley, Nancy Wilkins-Diehr, Marlon E. Pierce, Mark A. Miller, Sudhakar Pamidighantam, Julie Wernert:
Authoring a Science Gateway Cookbook. CLUSTER 2013: 1-3 - [c10]Mark A. Miller, Terri Schwartz, Wayne Pfeiffer:
Embedding CIPRES science gateway capabilities in phylogenetics software environments. XSEDE 2013: 40:1-40:8 - 2012
- [c9]Mark A. Miller, Wayne Pfeiffer, Terri Schwartz:
The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources. XSEDE 2012: 39:1-39:8 - 2011
- [c8]Mark A. Miller, Wayne Pfeiffer, Terri Schwartz:
The CIPRES science gateway: a community resource for phylogenetic analyses. TG 2011: 41:1-41:8
2000 – 2009
- 2008
- [j3]Mark A. Miller, Nick G. Kingsbury:
Image Modeling Using Interscale Phase Properties of Complex Wavelet Coefficients. IEEE Trans. Image Process. 17(9): 1491-1499 (2008) - [j2]Mark A. Miller, Nick G. Kingsbury:
Image Denoising Using Derotated Complex Wavelet Coefficients. IEEE Trans. Image Process. 17(9): 1500-1511 (2008) - 2007
- [c7]Rami Rifaieh, Roger Unwin, Jeremy Carver, Mark A. Miller:
SWAMI: Integrating Biological Databases and Analysis Tools Within User Friendly Environment. DILS 2007: 48-58 - 2006
- [c6]Mark A. Miller, Nick G. Kingsbury:
Statistical Image Modelling Using Interscale Phase Relationships of Complex Wavelet Coefficients. ICASSP (2) 2006: 789-792 - 2005
- [c5]Mark A. Miller, Nick G. Kingsbury, Richard W. Hobbs:
Seismic image reconstruction using complex wavelets. Computational Imaging 2005: 27-35 - [c4]Mark A. Miller, Nick G. Kingsbury, Richard W. Hobbs:
Seismic Imaging Using Complex Wavelets. ICASSP (2) 2005: 557-560 - 2004
- [j1]Wilfred W. Li, Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab, Coleman Mosley, Dmitry Pekurovsky, Greg B. Quinn, Ilya N. Shindyalov, Henri Casanova, Larry Ang, Fran Berman, Peter W. Arzberger, Mark A. Miller, Philip E. Bourne:
The Encyclopedia of Life Project: Grid Software and Deployment. New Gener. Comput. 22(2): 127-136 (2004) - [c3]Atif Shahab, Danny Chuon, Toyotaro Suzumura, Wilfred W. Li, Robert W. Byrnes, Kouji Tanaka, Larry Ang, Satoshi Matsuoka, Philip E. Bourne, Mark A. Miller, Peter W. Arzberger:
Grid Portal Interface for Interactive Use and Monitoring of High-Throughput Proteome Annotation. LSGRID 2004: 53-67 - [c2]Adam Birnbaum, James Hayes, Wilfred W. Li, Mark A. Miller, Peter W. Arzberger, Philip E. Bourne, Henri Casanova:
Grid Workflow Software for a High-Throughput Proteome Annotation Pipeline. LSGRID 2004: 68-81 - [c1]Ilkay Altintas, Adam Birnbaum, Kim K. Baldridge, Wibke Sudholt, Mark A. Miller, Céline Amoreira, Yohann Potier, Bertram Ludäscher:
A Framework for the Design and Reuse of Grid Workflows. SAG 2004: 120-133
Coauthor Index
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