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ORCIDXSEDE 2016: Miami, FL, USA
- Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale, Miami, USA, July 17-21, 2016. ACM 2016, ISBN 978-1-4503-4755-6
Accelerating Discovery in Scholarly Research
- Marcus Slavenas, Paul Rodríguez, Alan B. Craig, Elizabeth Wuerffel, Jeffrey Will:
Image Analysis and Infrastructure Support for Data Mining the Farm Security Administration: Office of War Information Photography Collection. 1:1-1:6 - Kiumars Soltani, Aiman Soliman, Anand Padmanabhan, Shaowen Wang:
UrbanFlow: Large-scale Framework to Integrate Social Media and Authoritative Landuse Maps. 2:1-2:8 - Ahmet Artu Yildirim
, David Tarboton, Yan Liu, Nazmus Shams Sazib, Shaowen Wang:
Accelerating TauDEM for Extracting Hydrology Information from National-Scale High Resolution Topographic Dataset: Extended Abstract. 3:1-3:2 - Barry I. Schneider, Klaus Bartschat, Xiaoxu Guan:
Time Propagation of Partial Differential Equations Using the Short Iterative Lanczos Method and Finite-Element Discrete Variable Representation: An Experiment Using the Intel Phi Coprocessors: Extended Abstract. 4:1-4:4 - Robert S. Sinkovits, Michael G. Duda:
Optimization and parallel load balancing of the MPAS Atmosphere Weather and Climate Code. 5:1-5:6 - Junqi Yin, Thomas Anthony, Jon Marstrander, Yuliang Liu, Chad Burdyshaw, Mitchel D. Horton, Lonnie D. Crosby, R. Glenn Brook, Frank Skidmore:
Optimization of non-linear image registration in AFNI. 6:1-6:6 - Wendy K. Tam Cho, Yan Y. Liu:
A Parallel Evolutionary Algorithm for Subset Selection in Causal Inference Models. 7:1-7:8 - Don Liu, Yonglai Zheng, Arden Moore:
Three Dimensional Simulations of Fluid Flow and Heat Transfer with Spectral Element Method. 8:1-8:9 - Hui Liu, Peng Zhang, Kun Wang, Bo Yang, Zhangxin Chen:
Performance and Scalability Analysis for Parallel Reservoir Simulations on Three Supercomputer Architectures. 9:1-9:8 - Eric Coulter, Jeremy Fischer, Barbara Hallock, Richard Knepper, Craig A. Stewart:
Implementation of Simple XSEDE-Like Clusters: Science Enabled and Lessons Learned. 10:1-10:8 - Kornelijus Survila, Ahmet Artu Yildirim, Ting Li, Yan Y. Liu, David G. Tarboton, Shaowen Wang:
A Scalable High-performance Topographic Flow Direction Algorithm for Hydrological Information Analysis. 11:1-11:7 - Gerard Vanloo, Chung Ng, Kison Osborne, Kwai Wong, Ben Ramsey, Dali Wang, Zhirong Bao:
Using High Performance Computing to Model Cellular Embryogenesis. 12:1-12:4 - Tyler McDaniel, Eduardo F. D'Azevedo, Ying Wai Li, Paul R. C. Kent, Ming Wong, Kwai Wong:
Delayed Update Algorithms for Quantum Monte Carlo Simulation on GPU: Extended Abstract. 13:1-13:4 - David M. Rogers:
Efficient Primitives for Standard Tensor Linear Algebra. 14:1-14:7 - Daniel Jacob Tward, Anthony Kolasny, Chelsea S. Sicat, Timothy Brown, Michael I. Miller:
Tools for studying populations and timeseries of neuroanatomy enabled through GPU acceleration in the Computational Anatomy Gateway. 15:1-15:7 - Roberto Camacho Barranco, Patricia J. Teller, Michael Gerndt:
Minimization of Xeon Phi Core Use with Negligible Execution Time Impact. 16:1-16:8 - Noushin Ghaffari, Jordi Abante, Raminder Singh, Philip D. Blood, Charles D. Johnson:
Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. 17:1-17:4 - David L. Hart, Melissa Rishel, Doug Nychka:
Estimating the Accuracy of User Surveys for Assessing the Impact of HPC Systems. 18:1-18:7 - Esthela Gallardo, Patricia J. Teller, Arturo Argueta, Jaime Jaloma:
Cross-Accelerator Performance Profiling. 19:1-19:8 - Scott McClary, Robert Henschel, Abhinav Thota, Holger Brunst, Benjamin Draper:
Improving the Scalability of a Charge Detection Mass Spectrometry Workflow. 20:1-20:8 - Tyson Lee Swetnam, J. D. Pelletier, Craig Rasmussen, N. R. Callahan, Nirav C. Merchant, Eric Lyons, Mats Rynge, Yan Liu, Viswanath Nandigam, Christopher J. Crosby:
Scaling GIS analysis tasks from the desktop to the cloud utilizing contemporary distributed computing and data management approaches: A case study of project-based learning and cyberinfrastructure concepts. 21:1-21:6
Technology
- Craig A. Stewart, David Y. Hancock, Matthew Vaughn, Jeremy Fischer, Tim Cockerill, Liming Lee, Nirav C. Merchant, Therese Miller, John Michael Lowe, Daniel C. Stanzione Jr., James Taylor, Edwin Skidmore:
Jetstream: performance, early experiences, and early results. 22:1-22:8 - Mahidhar Tatineni, Xiaoyi Lu, Dong Ju Choi, Amitava Majumdar, Dhabaleswar K. Panda:
Experiences and Benefits of Running RDMA Hadoop and Spark on SDSC Comet. 23:1-23:5 - Rick Wagner, Philip M. Papadopoulos, Dmitry Mishin, Trevor Cooper, Mahidhar Tatineni, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox:
User Managed Virtual Clusters in Comet. 24:1-24:8 - Spencer Julian, Michael Shuey, Seth Cook:
Containers in Research: Initial Experiences with Lightweight Infrastructure. 25:1-25:6 - Tabitha K. Samuel, John Long, Gary L. Rogers:
An Overview of the Implementation of CILogon at NICS. 26:1-26:5 - Kyle Chard, Steven Tuecke, Ian T. Foster:
Globus: Recent Enhancements and Future Plans. 27:1-27:8 - Chui-Hui Chiu, Nathan Lewis, Dipak Kumar Singh, Arghya Kusum Das, Mohammad M. Jalazai, Richard Platania, Sayan Goswami, Kisung Lee, Seung-Jong Park:
BIC-LSU: Big Data Research Integration with Cyberinfrastructure for LSU. 28:1-28:8 - Victor Hazlewood, Kathy Benninger, Gregory D. Peterson, Jason Charcalla, Benny Sparks, Jesse Hanley, Andrew K. Adams, Bryan Learn, Robert Budden, Derek Simmel, Joseph Lappa, Jared Yanovich:
Developing Applications with Networking Capabilities via End-to-End SDN (DANCES). 29:1-29:7 - Reuben D. Budiardja, Kapil Agrawal, Mark R. Fahey, Robert T. McLay, Doug James:
Library Function Tracking with XALT. 30:1-30:7 - Ruizhu Huang, Weijia Xu, Robert T. McLay:
A web interface for XALT log data analysis. 31:1-31:8 - Nikolay A. Simakov, Robert L. DeLeon, Joseph P. White, Thomas R. Furlani, Martins Innus, Steven M. Gallo, Matthew D. Jones, Abani K. Patra, Benjamin D. Plessinger, Jeanette M. Sperhac, Thomas Yearke, Ryan Rathsam, Jeffrey T. Palmer:
A Quantitative Analysis of Node Sharing on HPC Clusters Using XDMoD Application Kernels. 32:1-32:8
Software and Software Environments
- Smruti Padhy, Jay Alameda, Rob Kooper, Rui Liu, Sandeep Puthanveetil Satheesan, Inna Zharnitsky, Gregory Jansen, Michael C. Dietze, Praveen Kumar, Jong Lee, Richard Marciano, Luigi Marini, Barbara S. Minsker, Chris Navarro, Marcus Slavenas, William C. Sullivan, Kenton McHenry:
An Architecture for Automatic Deployment of Brown Dog Services at Scale into Diverse Computing Infrastructures. 33:1-33:8 - Cameron W. Smith, Brian Granzow, Dan Ibanez, Onkar Sahni, Kenneth E. Jansen, Mark S. Shephard:
In-memory Integration of Existing Software Components for Parallel Adaptive Unstructured Mesh Workflows. 34:1-34:6 - Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich:
A Virtual File System for On-Demand Processing of Multidimensional Datasets. 35:1-35:5 - Francisco Castejón, Antonio Gómez-Iglesias, Antonio López-Fraguas:
Optimization of 3D Fusion Devices. 36:1-36:7 - Nuwan Goonasekera, Andrew Lonie, James Taylor, Enis Afgan:
CloudBridge: a Simple Cross-Cloud Python Library. 37:1-37:8 - Drew Schmidt, Wei-Chen Chen, George Ostrouchov:
Introducing a New Client/Server Framework for Big Data Analytics with the R Language. 38:1-38:9 - Hao Hu, Xingchen Hong, Jeff Terstriep, Yan Y. Liu, Michael P. Finn, Johnathan Rush, Jeffrey Wendel, Shaowen Wang:
TopoLens: Building a CyberGIS Community Data Service for Enhancing the Usability of High-resolution National Topographic Datasets. 39:1-39:8 - Supun Nakandala, Sudhakar Pamidighantam, Shameera Yodage, Nipurn Doshi, Eroma Abeysinghe, Chathuri Peli Kankanamalage, Suresh Marru, Marlon E. Pierce:
Anatomy of the SEAGrid Science Gateway. 40:1-40:8 - Christopher S. Thompson, Steven M. Clark, Carol X. Song:
The XSEDE BLAST Gateway: Leveraging Campus Development for the XSEDE Community. 41:1-41:8 - Rohan Garg, Jiajun Cao, Kapil Arya, Gene Cooperman, Jérôme Vienne:
Extended Batch Sessions and Three-Phase Debugging: Using DMTCP to Enhance the Batch Environment. 42:1-42:8 - David E. Hudak, Douglas Johnson, Jeremy W. Nicklas, Eric Franz, Brian McMichael, Basil Gohar:
Open OnDemand: Transforming Computational Science Through Omnidisciplinary Software Cyberinfrastructure. 43:1-43:7 - Nawrin Sultana, Alexander Calvert, Jeffrey L. Overbey, Galen Wesley Arnold:
From OpenACC to OpenMP 4: Toward Automatic Translation. 44:1-44:8 - Amitava Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto, Ted Carnevale:
Understanding the Evolving Cyberinfrastructure Needs of the Neuroscience Community. 45:1-45:7 - Mark A. Miller, Terri Schwartz, Wayne Pfeiffer:
User behavior and usage patterns for a highly accessed science gateway. 46:1-46:8 - Walter Scarborough, Carrie Arnold, Maytal Dahan:
Case Study: Microservice Evolution and Software Lifecycle of the XSEDE User Portal API. 47:1-47:5 - Amit Chourasia, Mona Wong-Barnum, Dmitry Mishin, David R. Nadeau, Michael L. Norman:
SeedMe: A scientific data sharing and collaboration platform. 48:1-48:6 - Antonio Gómez-Iglesias, Carlos Rosales, Todd Evans:
Practical Monitoring of Resource Utilization for HPC Applications. 49:1-49:8 - Kerk F. Kee, Mona Sleiman, Michelle Williams, Dominique Stewart:
The 10 Attributes that Drive Adoption and Diffusion of Computational Tools in E-Science. 50:1-50:8
Workforce Development and Diversity
- Ritu Arora, Sukrit Sondhi:
An Agile Approach for Engaging Students in Research and Development. 51:1-51:4 - Ricardo González-Méndez, Jimmy Torres, Pallavi Ishwad, Hugh B. Nicholas Jr., Alexander Ropelewski:
Assisting Bioinformatics Programs at Minority Institutions: Needs Assessment, and Lessons Learned - A Look at an Internship Program. 52:1-52:8 - Kwai Wong, Gregory D. Peterson:
Challenges and Accomplishments of the Computational Science Undergraduate Research Experiences Program. 53:1-53:5 - Semir Sarajlic, Neranjan Edirisinghe, Yuriy Lukinov, Michael Walters, Brock Davis, Gregori Faroux:
Orion: Discovery Environment for HPC Research and Bridging XSEDE Resources. 54:1-54:5 - Linda Akli, Jay Alameda, Steven I. Gordon, Marcela Madrid, Lorna I. Rivera:
XSEDE Training: Achieving Access and Inclusion. 55:1-55:6 - Ruby Mendenhall, Nicole M. Brown, Michael L. Black, Mark Van Moer, Ismini Lourentzou, Karen Flynn, Malaika Mckee, Assata Zerai:
Rescuing Lost History: Using Big Data to Recover Black Women's Lived Experiences. 56:1-56:6 - Henry Neeman, Aaron Bergstrom, Dana Brunson, Carrie L. Ganote, Zane Gray, Brian Guilfoos, Robert Kalescky, Evan Lemley, Brian G. Moore, Sai Kumar Ramadugu, Alana Romanella, Johnathan Rush, Andrew H. Sherman, Brian Stengel, Dan Voss:
The Advanced Cyberinfrastructure Research and Education Facilitators Virtual Residency: Toward a National Cyberinfrastructure Workforce. 57:1-57:8
Visualization Showcase
- Amit Chourasia, Maggie Avery, Ashley Willis, Sam Greenwood, Christopher J. Davies, Catherine Constable, David Gubbins:
Visualization of Geodynamo Simulations. 58:1-58:3 - Anne M. Brown, Nicholas F. Polys, David R. Bevan, Ayat Mohammed:
Insights into Alzheimer's Disease: Molecular Dynamics (MD) Simulations of Peptide-Membrane Interactions. 59:1-59:3
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