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ORCIDCarlos Eduardo Ferreira
Person information
- affiliation: Department of Computer Science, Institute of Mathematics and Statistics, University of São Paulo, Brazil
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Books and Theses
- 1994
[b1]Carlos E. Ferreira:
On combinatorial optimization problems arising in computer system design. Technical University of Berlin, Germany, 1994, pp. 1-203
Journal Articles
- 2023
- [j43]Carlos Eduardo Ferreira, Flavio Keidi Miyazawa, Orlando Lee:
Preface: LAGOS'21 - XI Latin and American Algorithms, Graphs, and Optimization Symposium - São Paulo - Brazil. Discret. Appl. Math. 341: 393 (2023) - 2020
- [j42]Gustavo Estrela, Marco Dimas Gubitoso
, Carlos Eduardo Ferreira, Junior Barrera, Marcelo da Silva Reis:
An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection. Entropy 22(4): 492 (2020) - 2019
- [j41]Cristina G. Fernandes, Carlos E. Ferreira, Flávio Keidi Miyazawa, Yoshiko Wakabayashi:
Prices of Anarchy of Selfish 2D Bin Packing Games. Int. J. Found. Comput. Sci. 30(3): 355-374 (2019) - [j40]Marcelo da Silva Reis, Gustavo Estrela, Carlos Eduardo Ferreira, Junior Barrera:
Optimal Boolean lattice-based algorithms for the U-curve optimization problem. Inf. Sci. 471: 97-114 (2019) - [j39]Santiago Valdés Ravelo, Carlos Eduardo Ferreira:
A PTAS for the metric case of the optimum weighted source-destination communication spanning tree problem. Theor. Comput. Sci. 771: 9-22 (2019) - 2018
- [j38]Carlos Eduardo Ferreira, Álvaro Junio Pereira Franco:
A min-max relation in flowgraphs and some applications. Discret. Appl. Math. 245: 65-76 (2018) - 2017
- [j37]Santiago Valdés Ravelo, Carlos Eduardo Ferreira:
A PTAS for the metric case of the minimum sum-requirement communication spanning tree problem. Discret. Appl. Math. 228: 158-175 (2017) - [j36]Marcelo da Silva Reis, Gustavo Estrela, Carlos Eduardo Ferreira, Junior Barrera:
featsel: A framework for benchmarking of feature selection algorithms and cost functions. SoftwareX 6: 193-197 (2017) - 2016
- [j35]Cristina G. Fernandes, Carlos E. Ferreira, Álvaro Junio Pereira Franco, Rafael Crivellari Saliba Schouery:
The envy-free pricing problem, unit-demand markets and connections with the network pricing problem. Discret. Optim. 22: 141-161 (2016) - 2015
- [j34]Carlos E. Ferreira, Álvaro Junio Pereira Franco:
A min-max relation in flowgraphs. Electron. Notes Discret. Math. 50: 109-114 (2015) - 2014
- [j33]Vicente Acuña, Carlos Eduardo Ferreira, Alexandre S. Freire, Eduardo Moreno:
Solving the maximum edge biclique packing problem on unbalanced bipartite graphs. Discret. Appl. Math. 164: 2-12 (2014) - 2013
- [j32]Said Sadique Adi, Carlos Eduardo Ferreira:
Syntenic global alignment and its application to the gene prediction problem. J. Braz. Comput. Soc. 19(4): 511-521 (2013) - 2012
- [j31]Carlos Eduardo Ferreira, Fábio Protti, Jayme Luiz Szwarcfiter:
V Latin-American Algorithms, Graphs, and Optimization Symposium - Gramado, Brazil, 2009. Discret. Appl. Math. 160(18): 2499-2501 (2012) - [j30]Carlos Eduardo Ferreira, Ute Günther, Alexander Martin:
Mathematical Models and Polyhedral Studies for Integral Sheet Metal Design. SIAM J. Optim. 22(4): 1493-1517 (2012) - 2011
- [j29]Carlos Eduardo Ferreira, Alexandre S. Freire, G. A. Puglia:
A dynamic programming algorithm for the tree mapping problem. Electron. Notes Discret. Math. 37: 147-152 (2011) - [j28]Cristina G. Fernandes, Carlos Eduardo Ferreira, Flavio Keidi Miyazawa, Yoshiko Wakabayashi:
Selfish Square Packing. Electron. Notes Discret. Math. 37: 369-374 (2011) - [j27]André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Rui Yamaguchi, Teppei Shimamura, Carlos Eduardo Ferreira, Mari Cleide Sogayar, Satoru Miyano:
Inferring Contagion in Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8(2): 570-576 (2011) - 2010
- [j26]Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco Aurelio Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi:
Repetition-free longest common subsequence. Discret. Appl. Math. 158(12): 1315-1324 (2010) - [j25]Vicente Acuña, Carlos Eduardo Ferreira, Alexandre S. Freire, Eduardo Moreno:
The biclique k-clustering problem in bipartite graphs and its application in bioinformatics. Electron. Notes Discret. Math. 36: 159-166 (2010) - [j24]Carlos Eduardo Ferreira, Christian Tjandraatmadja:
A branch-and-cut approach to the repetition-free longest common subsequence problem. Electron. Notes Discret. Math. 36: 527-534 (2010) - 2009
- [j23]Thomas M. Liebling, Jayme Luiz Szwarcfiter, Carlos Eduardo Ferreira, Fábio Protti:
Preface. Electron. Notes Discret. Math. 35: 1-2 (2009) - [j22]Gerardo Valdisio R. Viana, Fernando A. C. Gomes, Carlos E. Ferreira, Cláudio Nogueira de Meneses:
Parallelisation of a multi-neighbourhood local search heuristic for a phylogeny problem. Int. J. Bioinform. Res. Appl. 5(2): 163-177 (2009) - [j21]André Fujita, João Ricardo Sato, Marcos Angelo Almeida Demasi, Mari Cleide Sogayar, Carlos Eduardo Ferreira, Satoru Miyano:
Comparing Pearson, Spearman and Hoeffding's d Measure for Gene Expression Association Analysis. J. Bioinform. Comput. Biol. 7(4): 663-684 (2009) - 2008
- [j20]Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco Aurelio Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi:
Repetition-free longest common subsequence. Electron. Notes Discret. Math. 30: 243-248 (2008) - [j19]André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Mari Cleide Sogayar, Carlos Eduardo Ferreira, Satoru Miyano:
Modeling Nonlinear Gene Regulatory Networks from Time Series Gene Expression Data. J. Bioinform. Comput. Biol. 6(5): 961-979 (2008) - 2007
- [j18]André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Pedro Alberto Morettin, Mari Cleide Sogayar, Carlos Eduardo Ferreira:
Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method. Bioinform. 23(13): 1623-1630 (2007) - [j17]André Fujita, João Ricardo Sato, Carlos Eduardo Ferreira, Mari Cleide Sogayar:
GEDI: a user-friendly toolbox for analysis of large-scale gene expression data. BMC Bioinform. 8 (2007) - [j16]André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Rui Yamaguchi, Satoru Miyano, Mari Cleide Sogayar, Carlos Eduardo Ferreira:
Modeling gene expression regulatory networks with the sparse vector autoregressive model. BMC Syst. Biol. 1: 39 (2007) - [j15]Paulo Feofiloff, Cristina G. Fernandes, Carlos Eduardo Ferreira, José Coelho de Pina:
Primal-dual approximation algorithms for the Prize-Collecting Steiner Tree Problem. Inf. Process. Lett. 103(5): 195-202 (2007) - 2006
- [j14]André Fujita, João Ricardo Sato, Leonardo de Oliveira Rodrigues, Carlos Eduardo Ferreira, Mari Cleide Sogayar:
Evaluating different methods of microarray data normalization. BMC Bioinform. 7: 469 (2006) - [j13]Carlos Eduardo Ferreira, Fernando Mário de Oliveira Filho:
Some formulations for the group steiner tree problem. Discret. Appl. Math. 154(13): 1877-1884 (2006) - [j12]Carlos Eduardo Ferreira, Fernando Mário de Oliveira Filho:
New Reduction Techniques for the Group Steiner Tree Problem. SIAM J. Optim. 17(4): 1176-1188 (2006) - 2005
- [j11]Said Sadique Adi, Carlos Eduardo Ferreira:
Gene prediction by multiple syntenic alignment. J. Integr. Bioinform. 2(1) (2005) - 2004
- [j10]Carlos Eduardo Ferreira, Fernando Mário de Oliveira Filho:
Some Formulations for the Group Steiner Tree Problem. Electron. Notes Discret. Math. 18: 127-132 (2004) - [j9]O. Alves, Carlos Eduardo Ferreira, Fabio Prates Machado:
Estimates for the spreading velocity of an epidemic model. Math. Comput. Simul. 64(6): 609-616 (2004) - 2002
- [j8]Carlos Eduardo Ferreira, C. Carvalho de Souza, Yoshiko Wakabayashi:
Rearrangement of DNA fragments: a branch-and-cut algorithm. Discret. Appl. Math. 116(1-2): 161-177 (2002) - 2001
- [j7]Said Sadique Adi, Carlos Eduardo Ferreira:
DNA Fragments Assembly Programs: a comparative study. Electron. Notes Discret. Math. 7: 158-161 (2001) - 2000
- [j6]Ronaldo Fumio Hashimoto, Junior Barrera, Carlos Eduardo Ferreira:
A Combinatorial Optimization Technique for the Sequential Decomposition of Erosions and Dilations. J. Math. Imaging Vis. 13(1): 17-33 (2000) - 1998
- [j5]Carlos Eduardo Ferreira, Alexander Martin, C. Carvalho de Souza, Robert Weismantel, Laurence A. Wolsey:
The node capacitated graph partitioning problem: A computational study. Math. Program. 81: 229-256 (1998) - [j4]Ralf Borndörfer, Carlos E. Ferreira, Alexander Martin:
Decomposing Matrices into Blocks. SIAM J. Optim. 9(1): 236-269 (1998) - 1996
- [j3]Carlos Eduardo Ferreira, Alexander Martin, C. Carvalho de Souza, Robert Weismantel, Laurence A. Wolsey:
Formulations and valid inequalities for the node capacitated graph partitioning problem. Math. Program. 74: 247-266 (1996) - [j2]Carlos E. Ferreira, Alexander Martin, Robert Weismantel:
Solving Multiple Knapsack Problems by Cutting Planes. SIAM J. Optim. 6(3): 858-877 (1996) - 1993
- [j1]Carlos E. Ferreira, Martin Grötschel, Alexander Martin, Robert Weismantel, Stefan Kiefl, Ludwig Krispenz:
Some integer programs arising in the design of main frame computers. ZOR Methods Model. Oper. Res. 38(1): 77-100 (1993)
Conference and Workshop Papers
- 2015
- [c8]Santiago Valdés Ravelo, Carlos E. Ferreira:
A PTAS for the Metric Case of the Minimum Sum-Requirement Communication Spanning Tree Problem. CALDAM 2015: 9-20 - [c7]Santiago Valdés Ravelo, Carlos E. Ferreira:
PTAS's for Some Metric p-source Communication Spanning Tree Problems. WALCOM 2015: 137-148 - 2014
- [c6]Carlos Eduardo Ferreira, Álvaro Junio Pereira Franco, Marcio Ferreira da Silva:
Finding Matrimonial Circuits in some Amerindian Kinship Networks: An Experimental Study. eScience 2014: 73-80 - [c5]Cristina G. Fernandes, Carlos Eduardo Ferreira, Álvaro Junio Pereira Franco, Rafael Crivellari Saliba Schouery:
The Envy-Free Pricing Problem and Unit-Demand Markets. ISCO 2014: 230-241 - 2012
- [c4]Alexandre S. Freire, Vicente Acuña, Pilu Crescenzi, Carlos Eduardo Ferreira, Vincent Lacroix, Paulo Vieira Milreu, Eduardo Moreno, Marie-France Sagot:
Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone. ISCO 2012: 165-177 - 2010
- [c3]Alexandre S. Freire, R. M. Cesar Jr., Carlos Eduardo Ferreira:
A Column Generation Approach for the Graph Matching Problem. ICPR 2010: 1088-1091 - 2008
- [c2]Cristina G. Fernandes, Carlos Eduardo Ferreira, Christian Tjandraatmadja, Yoshiko Wakabayashi:
A Polyhedral Investigation of the LCS Problem and a Repetition-Free Variant. LATIN 2008: 329-338 - 2005
- [c1]Said Sadique Adi, Carlos Eduardo Ferreira:
Gene Prediction by Syntenic Alignment. BSB 2005: 246-250
Editorship
- 2021
- [e2]Carlos E. Ferreira, Orlando Lee, Flávio Keidi Miyazawa:
Proceedings of the XI Latin and American Algorithms, Graphs and Optimization Symposium, LAGOS 2021, Online Event / São Paulo, Brazil, May 2021. Procedia Computer Science 195, Elsevier 2021 [contents] - 2010
- [e1]Carlos Eduardo Ferreira, Satoru Miyano, Peter F. Stadler:
Advances in Bioinformatics and Computational Biology, 5th Brazilian Symposium on Bioinformatics, BSB 2010, Rio de Janeiro, Brazil, August 31-September 3, 2010. Proceedings. Lecture Notes in Computer Science 6268, Springer 2010, ISBN 978-3-642-15059-3 [contents]
Informal and Other Publications
- 2017
- [i6]Cristina G. Fernandes, Carlos E. Ferreira, Flávio Keidi Miyazawa, Yoshiko Wakabayashi:
Prices of anarchy of selfish 2D bin packing games. CoRR abs/1707.07882 (2017) - 2014
- [i5]Marcelo da Silva Reis, Carlos Eduardo Ferreira, Junior Barrera:
The U-curve optimization problem: improvements on the original algorithm and time complexity analysis. CoRR abs/1407.6067 (2014) - 2013
- [i4]Cristina G. Fernandes, Carlos Eduardo Ferreira, Álvaro Junio Pereira Franco, Rafael Crivellari Saliba Schouery:
The Unit-Demand Envy-Free Pricing Problem. CoRR abs/1310.0038 (2013) - 2012
- [i3]Carlos Eduardo Ferreira, Álvaro Junio Pereira Franco:
Algorithms for Junctions in Directed Acyclic Graphs. CoRR abs/1204.3113 (2012) - [i2]Daniel Yasumasa Takahashi, João Ricardo Sato, Carlos Eduardo Ferreira, André Fujita:
Discriminating different classes of biological networks by analyzing the graphs spectra distribution. CoRR abs/1208.2976 (2012) - 2010
- [i1]Paulo Feofiloff, Cristina G. Fernandes, Carlos Eduardo Ferreira, José Coelho de Pina:
A note on Johnson, Minkoff and Phillips' algorithm for the Prize-Collecting Steiner Tree Problem. CoRR abs/1004.1437 (2010)
Coauthor Index
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