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ORCIDJody Clements
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- affiliation: Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA, USA
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Journal Articles
- 2024
[j12]Jody Clements, Cristian Goina, Philip M. Hubbard, Takashi Kawase, Donald J. Olbris, Hideo Otsuna, Robert Svirskas, Konrad Rokicki:
NeuronBridge: an intuitive web application for neuronal morphology search across large data sets. BMC Bioinform. 25(1): 114 (2024)- 2022
- [j11]Stephen M. Plaza, Jody Clements, Tom Dolafi, Lowell A. Umayam, Nicole N. Neubarth, Louis K. Scheffer, Stuart E. Berg
:
neuPrint: An open access tool for EM connectomics. Frontiers Neuroinformatics 16 (2022) - 2020
- [j10]Elena Rivas, Jody Clements, Sean R. Eddy:
Estimating the power of sequence covariation for detecting conserved RNA structure. Bioinform. 36(10): 3072-3076 (2020) - 2016
- [j9]Robert Hubley, Robert D. Finn, Jody Clements, Sean R. Eddy, Thomas A. Jones, Weidong Bao, Arian F. A. Smit, Travis J. Wheeler:
The Dfam database of repetitive DNA families. Nucleic Acids Res. 44(Database-Issue): 81-89 (2016) - 2015
- [j8]Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy:
HMMER web server: 2015 update. Nucleic Acids Res. 43(Webserver-Issue): W30-W38 (2015) - 2014
- [j7]Travis J. Wheeler, Jody Clements, Robert D. Finn:
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models. BMC Bioinform. 15: 7 (2014) - [j6]Robert D. Finn, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Andreas Heger, Kirstie Hetherington, Liisa Holm, Jaina Mistry, Erik L. L. Sonnhammer, John G. Tate, Marco Punta:
Pfam: the protein families database. Nucleic Acids Res. 42(Database-Issue): 222-230 (2014) - [j5]Robert D. Finn, Benjamin L. Miller, Jody Clements, Alex Bateman:
iPfam: a database of protein family and domain interactions found in the Protein Data Bank. Nucleic Acids Res. 42(Database-Issue): 364-373 (2014) - 2013
- [j4]Travis J. Wheeler, Jody Clements, Sean R. Eddy, Robert Hubley, Thomas A. Jones, Jerzy Jurka, Arian F. A. Smit, Robert D. Finn:
Dfam: a database of repetitive DNA based on profile hidden Markov models. Nucleic Acids Res. 41(Database-Issue): 70-82 (2013) - 2012
- [j3]Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn:
The Pfam protein families database. Nucleic Acids Res. 40(Database-Issue): 290-301 (2012) - 2011
- [j2]Robert D. Finn, Jody Clements, Sean R. Eddy:
HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 39(Web-Server-Issue): 29-37 (2011) - 2007
- [j1]Robert D. Finn, James W. Stalker, David K. Jackson, Eugene Kulesha, Jody Clements, Roger Pettett:
ProServer: a simple, extensible Perl DAS server. Bioinform. 23(12): 1568-1570 (2007)
Coauthor Index
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