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ORCIDDeok-Soo Kim
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Publications
- 2015
[j50]Jae-Kwan Kim, Youngsong Cho, Mokwon Lee, Roman A. Laskowski
, Seong Eon Ryu, Kokichi Sugihara, Deok-Soo Kim:
BetaCavityWeb: a webserver for molecular voids and channels. Nucleic Acids Res. 43(Webserver-Issue): W413-W418 (2015)- 2014
- [j49]Jae-Kwan Kim, Youngsong Cho, Donguk Kim, Deok-Soo Kim:
Voronoi diagrams, quasi-triangulations, and beta-complexes for disks in R2: the theory and implementation in BetaConcept. J. Comput. Des. Eng. 1(2): 79-87 (2014) - [j48]Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim:
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. Trans. Comput. Sci. 22: 130-155 (2014) - [c48]Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song, Deok-Soo Kim:
Molecular Geometry and BULL! CW 2014: 261-268 - [c47]Jae-Kwan Kim, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Deok-Soo Kim, Donguk Kim:
BetaConcept: A Program for Voronoi Diagrams, Dual Structures, and Complexes in the Plane. ICCSA (Workshops/Short Papers/Posters) 2014: 233-236 - [c46]Donguk Kim, Youngsong Cho, Jae-Kwan Kim, Yuan-Shin Lee, Deok-Soo Kim:
How Similar Are Quasi-, Regular, and Delaunay Triangulations in ℝ3? ICCSA (2) 2014: 381-393 - [c45]Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song:
BULL! - The Molecular Geometry Engine Based on Voronoi Diagram, Quasi-Triangulation, and Beta-Complex. ICMS 2014: 206-213 - 2013
- [j47]Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu, Jae-Kwan Kim, Donguk Kim:
Anomalies in quasi-triangulations and beta-complexes of spherical atoms in molecules. Comput. Aided Des. 45(1): 35-52 (2013) - [j46]Woong-Hee Shin, Jae-Kwan Kim, Deok-Soo Kim, Chaok Seok:
GalaxyDock2: Protein-ligand docking using beta-complex and global optimization. J. Comput. Chem. 34(30): 2647-2656 (2013) - [j44]Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Kokichi Sugihara:
Tunnels and Voids in Molecules via Voronoi Diagrams and Beta-Complexes. Trans. Comput. Sci. 20: 92-111 (2013) - 2012
- [j43]Deok-Soo Kim, Jae-Kwan Kim, Youngsong Cho, Chong-Min Kim:
Querying simplexes in quasi-triangulation. Comput. Aided Des. 44(2): 85-98 (2012) - [j42]Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu:
QTF: Quasi-triangulation file format. Comput. Aided Des. 44(9): 835-845 (2012) - 2011
- [c40]Youngsong Cho, Jae-Kwan Kim, Chung In Won, Joonghyun Ryu, Chong-Min Kim, Deok-Soo Kim:
BetaMol: Molecular Modeling, Analysis, and Visualization Software Based on the Beta-Complex Derived from the Voronoi Diagram. ISVD 2011: 48-57 - 2010
- [j34]Chong-Min Kim, Chung In Won, Jae-Kwan Kim, Joonghyun Ryu, Jong Bhak, Deok-Soo Kim:
Protein-Ligand Docking Based on Beta-Shape. Trans. Comput. Sci. 9: 123-138 (2010) - [c39]Deok-Soo Kim, Jae-Kwan Kim, Chong-Min Kim:
Searching Simplexes in Quasi-triangulation. ISVD 2010: 105-111 - 2009
- [c38]Chong-Min Kim, Chung In Won, Joonghyun Ryu, Jae-Kwan Kim, Jong Bhak, Deok-Soo Kim:
Protein-Ligand Docking Based on ss-shape. ISVD 2009: 245-253
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