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ORCIDShawn C. Shadden
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Journal Articles
- 2023
[j9]Siavash Ameli
, Shawn C. Shadden:
A singular Woodbury and pseudo-determinant matrix identities and application to Gaussian process regression. Appl. Math. Comput. 452: 128032 (2023)- [j8]Fanwei Kong, Shawn C. Shadden:
Learning Whole Heart Mesh Generation From Patient Images for Computational Simulations. IEEE Trans. Medical Imaging 42(2): 533-545 (2023) - 2022
- [j7]Chi Zhu, Vijay Vedula, David W. Parker, Nathan M. Wilson, Shawn C. Shadden, Alison L. Marsden:
svFSI: A Multiphysics Package for Integrated Cardiac Modeling. J. Open Source Softw. 7(78): 4118 (2022) - [j6]Siavash Ameli, Shawn C. Shadden:
Interpolating log-determinant and trace of the powers of matrix bfA + tbfB. Stat. Comput. 32(6): 108 (2022) - 2021
- [j5]Fanwei Kong, Nathan M. Wilson, Shawn C. Shadden:
A deep-learning approach for direct whole-heart mesh reconstruction. Medical Image Anal. 74: 102222 (2021) - [j4]Víctor M. Campello, Polyxeni Gkontra, Cristian Izquierdo, Carlos Martín-Isla, Alireza Sojoudi, Peter M. Full, Klaus H. Maier-Hein, Yao Zhang, Zhiqiang He, Jun Ma, Mario Parreño, Alberto Albiol, Fanwei Kong, Shawn C. Shadden, Jorge Corral Acero, Vaanathi Sundaresan, Mina Saber, Mustafa A. Alattar, Hongwei Li, Bjoern H. Menze, Firas Khader, Christoph Haarburger, Cian M. Scannell, Mitko Veta, Adam Carscadden, Kumaradevan Punithakumar, Xiao Liu, Sotirios A. Tsaftaris, Xiaoqiong Huang, Xin Yang, Lei Li, Xiahai Zhuang, David Viladés, Martín Luís Descalzo, Andrea Guala, Lucia La Mura, Matthias G. W. Friedrich, Ria Garg, Julie Lebel, Filipe Henriques, Mahir Karakas, Ersin Çavus, Steffen E. Petersen, Sergio Escalera, Santi Seguí, José F. Rodríguez Palomares, Karim Lekadir:
Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge. IEEE Trans. Medical Imaging 40(12): 3543-3554 (2021) - 2019
- [j3]Miguel A. Rodriguez, Christoph M. Augustin, Shawn C. Shadden:
FEniCS mechanics: A package for continuum mechanics simulations. SoftwareX 9: 107-111 (2019) - 2016
- [j2]Adam Updegrove, Nathan M. Wilson, Shawn C. Shadden:
Boolean and smoothing of discrete polygonal surfaces. Adv. Eng. Softw. 95: 16-27 (2016) - [j1]Mingcheng Chen, Shawn C. Shadden, John C. Hart:
Fast Coherent Particle Advection through Time-Varying Unstructured Flow Datasets. IEEE Trans. Vis. Comput. Graph. 22(8): 1959-1972 (2016)
Conference and Workshop Papers
- 2025
- [c7]Numi Sveinsson Cepero, Arjun Narayanan, Shawn C. Shadden:
Integrated Framework for Unified Cardiac and Vascular Mesh Construction from Medical Images. FIMH (2) 2025: 98-109 - 2021
- [c6]Fanwei Kong, Shawn C. Shadden:
Whole Heart Mesh Generation for Image-Based Computational Simulations by Learning Free-From Deformations. MICCAI (4) 2021: 550-559 - 2020
- [c5]Fanwei Kong, Shawn C. Shadden:
A Generalizable Deep-Learning Approach for Cardiac Magnetic Resonance Image Segmentation Using Image Augmentation and Attention U-Net. M&Ms and EMIDEC/STACOM@MICCAI 2020: 287-296 - 2019
- [c4]Jiacheng Wu, Jian-Xun Wang, Shawn C. Shadden:
Adding Constraints to Bayesian Inverse Problems. AAAI 2019: 1666-1673 - 2017
- [c3]Craig J. Goergen, Shawn C. Shadden, Alison L. Marsden:
SimVascular as an instructional tool in the classroom. FIE 2017: 1-4 - 2005
- [c2]Tamer Inanc, Shawn C. Shadden, Jerrold E. Marsden:
Optimal trajectory generation in ocean flows. ACC 2005: 674-679vol.1 - 2003
- [c1]Dong Eui Chang, Shawn C. Shadden, Jerrold E. Marsden, Reza Olfati-Saber:
Collision avoidance for multiple agent systems. CDC 2003: 539-543
Parts in Books or Collections
- 2014
- [p1]Siavash Ameli, Yogin Desai, Shawn C. Shadden:
Development of an Efficient and Flexible Pipeline for Lagrangian Coherent Structure Computation. Topological Methods in Data Analysis and Visualization 2014: 201-215
Informal and Other Publications
- 2025
- [i10]Numi Sveinsson Cepero, Shawn C. Shadden:
SeqSeg: Learning Local Segments for Automatic Vascular Model Construction. CoRR abs/2501.15712 (2025) - 2023
- [i9]Arjun Narayanan, Fanwei Kong, Shawn C. Shadden:
LinFlo-Net: A two-stage deep learning method to generate simulation ready meshes of the heart. CoRR abs/2310.20065 (2023) - 2022
- [i8]Fanwei Kong, Shawn C. Shadden:
Learning Whole Heart Mesh Generation From Patient Images For Computational Simulations. CoRR abs/2203.10517 (2022) - [i7]Siavash Ameli, Shawn C. Shadden:
Noise Estimation in Gaussian Process Regression. CoRR abs/2206.09976 (2022) - [i6]Siavash Ameli, Shawn C. Shadden:
A Singular Woodbury and Pseudo-Determinant Matrix Identities and Application to Gaussian Process Regression. CoRR abs/2207.08038 (2022) - [i5]Siavash Ameli, Yogin Desai, Shawn C. Shadden:
Development of an Efficient and Flexible Pipeline for Lagrangian Coherent Structure Computation. CoRR abs/2209.13775 (2022) - 2021
- [i4]Fanwei Kong, Nathan M. Wilson, Shawn C. Shadden:
A Deep-Learning Approach For Direct Whole-Heart Mesh Reconstruction. CoRR abs/2102.07899 (2021) - [i3]Fanwei Kong, Shawn C. Shadden:
Whole Heart Mesh Generation For Image-Based Computational Simulations By Learning Free-From Deformations. CoRR abs/2107.10839 (2021) - 2020
- [i2]Siavash Ameli, Shawn C. Shadden:
Interpolating the Trace of the Inverse of Matrix A + tB. CoRR abs/2009.07385 (2020) - 2019
- [i1]Miguel A. Rodriguez, Christoph M. Augustin, Shawn C. Shadden:
FEniCS Mechanics: A Package for Continuum Mechanics Simulations. CoRR abs/1901.07960 (2019)
Coauthor Index
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