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Publication search results
found 82 matches
- 2024
- Leopoldo Palma, Leila Ortiz, José Niz, Marcelo Berretta, Diego Sauka:
Draft Genome Sequence of Bacillus thuringiensis INTA 103-23 Reveals Its Insecticidal Properties: Insights from the Genomic Sequence. Data 9(3): 40 (2024) - Sheena K. S., Madhu S. Nair:
GenCoder: A Novel Convolutional Neural Network Based Autoencoder for Genomic Sequence Data Compression. IEEE ACM Trans. Comput. Biol. Bioinform. 21(3): 405-415 (2024) - 2023
- Ke Cheng, Yantian Hou, Liangmin Wang:
Secure Similar Sequence Query over Multi-source Genomic Data on Cloud. IEEE Trans. Cloud Comput. 11(3): 2803-2819 (2023) - Amadeu Scheppach, Hüseyin Anil Gündüz, Emilio Dorigatti, Philipp C. Münch, Alice C. McHardy, Bernd Bischl, Mina Rezaei, Martin Binder:
Neural Architecture Search for Genomic Sequence Data. CIBCB 2023: 1-10 - Eyes S. Robson, Nilah Ioannidis:
GUANinE v1.0: Benchmark Datasets for Genomic AI Sequence-to-Function Models. MLCB 2023: 250-266 - 2022
- Yoshihiro Shibuya:
Sketching data structures for alignment-free analysis of genomic sequences. (Esquissage de structures de données pour l'analyse de séquences génomiques sans alignements). University of Paris-Est, France, 2022 - Xin Li, Yufeng Wu:
Detecting genomic deletions from high-throughput sequence data with unsupervised learning. BMC Bioinform. 23-S(8): 568 (2022) - 2021
- Stefano Ceri:
Storing and analyzing viral sequences through data-driven Genomic Computing. SEBD 2021: i - Thomas Schneider, Oleksandr Tkachenko:
EPISODE: Efficient Privacy-PreservIng Similar Sequence Queries on Outsourced Genomic DatabasEs. IACR Cryptol. ePrint Arch. 2021: 29 (2021) - 2020
- Mariana Reyes-Prieto, Carlos Vargas-Chávez, Mercè Llabrés, Pere Palmer, Amparo Latorre, Andrés Moya:
An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms. Database J. Biol. Databases Curation 2020: baz160 (2020) - Prateek Gupta, Pankaj Singh Dholaniya, Sameera Devulapalli, Nilesh R. Tawari, Yellamaraju Sreelakshmi, Rameshwar Sharma:
Reanalysis of genome sequences of tomato accessions and its wild relatives: development of Tomato Genomic Variation (TGV) database integrating SNPs and INDELs polymorphisms. Bioinform. 36(20): 4984-4990 (2020) - Nicolaas C. Kist, Robert A. Power, Andrew Skelton, Seth D. Seegobin, Moira Verbelen, Bushan Bonde, Karim Malki:
RNASeq_similarity_matrix: visually identify sample mix-ups in RNASeq data using a 'genomic' sequence similarity matrix. Bioinform. 36(6): 1940-1941 (2020) - Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue:
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data. BMC Bioinform. 21(1): 257 (2020) - Dara Hallinan:
The genomic data deficit: On the need to inform research subjects of the informational content of their genomic sequence data in consent for genomic research. Comput. Law Secur. Rev. 37: 105427 (2020) - Roman Kaplan, Leonid Yavits, Ran Ginosar:
BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data. SYSTOR 2020: 36-48 - 2019
- Paul Greenfield:
Applications of kMer Distinctiveness and Context Exploration in the Data-driven Analysis of Genomic Sequences. University of Sydney, Australia, 2019 - Ana A. Hernandez-Lopez:
On the relevance of quality score metadata in genomic sequence data for omics applications. EPFL, Switzerland, 2019 - Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo:
Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics. BMC Bioinform. 20-S(4): 138:1-138:14 (2019) - Roman Kaplan, Leonid Yavits, Ran Ginosar:
POSTER: BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data. PACT 2019: 459-460 - Thomas Schneider, Oleksandr Tkachenko:
EPISODE: Efficient Privacy-PreservIng Similar Sequence Queries on Outsourced Genomic DatabasEs. AsiaCCS 2019: 315-327 - Roman Kaplan, Leonid Yavits, Ran Ginosar:
BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data. CoRR abs/1901.05959 (2019) - 2018
- Ke Cheng, Yantian Hou, Liangmin Wang:
Secure Similar Sequence Query on Outsourced Genomic Data. AsiaCCS 2018: 237-251 - Hussein A. Hejase, Natalie Vande Pol, Gregory M. Bonito, Kevin J. Liu:
FastNet: Fast and Accurate Statistical Inference of Phylogenetic Networks Using Large-Scale Genomic Sequence Data. RECOMB-CG 2018: 242-259 - Thomas Schneider, Oleksandr Tkachenko:
Towards Efficient Privacy-Preserving Similar Sequence Queries on Outsourced Genomic Databases. WPES@CCS 2018: 71-75 - Umberto Ferraro Petrillo, Mara Sorella, Giuseppe Cattaneo, Raffaele Giancarlo, Simona E. Rombo:
Analyzing Big Datasets of Genomic Sequences: Fast and Scalable Collection of k-mer Statistics. CoRR abs/1807.01566 (2018) - 2017
- Daniel Valenzuela:
Algorithms and Data Structures for Sequence Analysis in the Pan-Genomic Era. University of Helsinki, Finland, 2017 - Louise-Amelie Schmitt:
Développement de modèles spécifiques aux séquences génomique virales. (Developing viral genomic data-specific classification models). University of Bordeaux, France, 2017 - Md Safiur Rahman Mahdi, Mohammad Zahidul Hasan, Noman Mohammed:
Secure Sequence Similarity Search on Encrypted Genomic Data. CHASE 2017: 205-213 - 2016
- Hákon Guðbjartsson, Guðmundur Fr. Georgsson, Sigurjón Axel Guðjónsson, Ragnar þór Valdimarsson, Jóhann H. Sigurðsson, Sigmar K. Stefánsson, Gísli Másson, Gísli Magnússon, Vilmundur Pálmason, Kári Stefánsson:
GORpipe: a query tool for working with sequence data based on a Genomic Ordered Relational (GOR) architecture. Bioinform. 32(20): 3081-3088 (2016) - Andreas Prlic, Tara Kalro, Roshni Bhattacharya, Cole H. Christie, Stephen K. Burley, Peter W. Rose:
Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank. Bioinform. 32(24): 3833-3835 (2016)
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