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Publication search results
found 627 matches
- 2024
- Olga A. Kulaeva, Evgeny A. Zorin, Anton S. Sulima, Gulnar A. Akhtemova, Vladimir A. Zhukov:
Draft Genome Sequence of the Commercial Strain Rhizobium ruizarguesonis bv. viciae RCAM1022. Data 9(2): 19 (2024) - Yongtao Ye, Marcus H. Shum, Joseph L. Tsui, Guangchuang Yu, David K. Smith, Huachen Zhu, Joseph T. Wu, Yi Guan, Tommy Tsan-Yuk Lam:
Robust expansion of phylogeny for fast-growing genome sequence data. PLoS Comput. Biol. 20(2) (2024) - Sumit Walia, Cheng Ye, Arkid Bera, Dhruvi Lodhavia, Yatish Turakhia:
TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers. HPCA 2024: 91-107 - 2023
- Mikhail Karasikov:
Scalable Annotated Genome Graphs for Representing Sequence Data. ETH Zurich, Zürich, Switzerland, 2023 - Lennert Verboven:
Computational methods for whole genome sequence guided individualized treatment of drug resistant tuberculosis. University of Antwerp, Belgium, 2023 - Na Lu, Yi Qiao, Pengfei An, Jiajian Luo, Changwei Bi, Musheng Li, Zuhong Lu, Jing Tu:
Exploration of whole genome amplification generated chimeric sequences in long-read sequencing data. Briefings Bioinform. 24(5) (2023) - Yao-zhong Zhang, Yunjie Liu, Zeheng Bai, Kosuke Fujimoto, Satoshi Uematsu, Seiya Imoto:
Zero-shot-capable identification of phage-host relationships with whole-genome sequence representation by contrastive learning. Briefings Bioinform. 24(5) (2023) - Niema Moshiri:
ViralConsensus: a fast and memory-efficient tool for calling viral consensus genome sequences directly from read alignment data. Bioinform. 39(5) (2023) - Sehi Park, Mobeen Ur Rehman, Farman Ullah, Hilal Tayara, Kil To Chong:
iCpG-Pos: an accurate computational approach for identification of CpG sites using positional features on single-cell whole genome sequence data. Bioinform. 39(8) (2023) - Wuwei Tan, Yang Shen:
Multimodal learning of noncoding variant effects using genome sequence and chromatin structure. Bioinform. 39(9) (2023) - Lisa Fiedler, Matthias Bernt, Martin Middendorf, Peter F. Stadler:
Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs. BMC Bioinform. 24(1): 235 (2023) - Xiaoyu Yu:
Genofunc: genome annotation and identification of genome features for automated pipelining analysis of virus whole genome sequences. BMC Bioinform. 24(1): 218 (2023) - Andrey P. Bogoyavlenskiy, Madina S. Alexyuk, Amankeldi K. Sadanov, Vladimir E. Berezin, Lyudmila P. Trenozhnikova, Gul B. Baymakhanova:
Draft Genome Sequence Data of Streptomyces anulatus, Strain K-31. Data 8(8): 131 (2023) - Vladimir K. Chebotar, Maria S. Gancheva, Elena P. Chizhevskaya, Maria E. Baganova, Oksana V. Keleinikova, Kharon A. Husainov, Veronika N. Pishchik:
Genome Sequence of the Plant-Growth-Promoting Endophyte Curtobacterium flaccumfaciens Strain W004. Data 8(12): 187 (2023) - Maria N. Romanenko, Maksim A. Nesterenko, Anton E. Shikov, Anton A. Nizhnikov, Kirill S. Antonets:
Draft Genome Sequence Data of Lysinibacillus sphaericus Strain 1795 with Insecticidal Properties. Data 8(11): 167 (2023) - Mohammad H. Alshayeji, Silpa ChandraBhasi Sindhu, Sa'ed Abed:
Viral genome prediction from raw human DNA sequence samples by combining natural language processing and machine learning techniques. Expert Syst. Appl. 218: 119641 (2023) - M. Muthulakshmi, G. Murugeswari:
A hybrid grey wolf-whale optimization algorithm for classification of corona virus genome sequences using deep learning. Int. Arab J. Inf. Technol. 20(3): 331-339 (2023) - Yogesh H. Bhosale, K. Sridhar Patnaik:
Bio-medical imaging (X-ray, CT, ultrasound, ECG), genome sequences applications of deep neural network and machine learning in diagnosis, detection, classification, and segmentation of COVID-19: a Meta-analysis & systematic review. Multim. Tools Appl. 82(25): 39157-39210 (2023) - Damian Szklarczyk, Rebecca Kirsch, Mikaela Koutrouli, Katerina C. Nastou, Farrokh Mehryary, Radja Hachilif, Annika L. Gable, Tao Fang, Nadezhda T. Doncheva, Sampo Pyysalo, Peer Bork, Lars Juhl Jensen, Christian von Mering:
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic Acids Res. 51(D1): 638-646 (2023) - Tian Cai, Li Xie, Shuo Zhang, Muge Chen, Di He, Amitesh Badkul, Yang Liu, Hari Krishna Namballa, Michael Dorogan, Wayne W. Harding, Cameron Mura, Philip E. Bourne, Lei Xie:
End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins. PLoS Comput. Biol. 19(1) (2023) - Subhankar Roy, Anirban Mukhopadhyay:
A Comparative Study on the Evaluation of k-mer Indexing in Genome Sequence Compression. CICBA (1) 2023: 28-42 - Manas Jyoti Das, Khawar Shehzad, Praveen Rao:
Efficient Variant Calling on Human Genome Sequences Using a GPU-Enabled Commodity Cluster. CIKM 2023: 3843-3848 - Hongtao Zhong, Zhonghao Chen, Wenqin Huangfu, Chen Wang, Yixin Xu, Tianyi Wang, Yao Yu, Yongpan Liu, Vijaykrishnan Narayanan, Huazhong Yang, Xueqing Li:
ASMCap: An Approximate String Matching Accelerator for Genome Sequence Analysis Based on Capacitive Content Addressable Memory. DAC 2023: 1-6 - Hamza Errahmouni Barkam, Sanggeon Yun, Paul R. Genssler, Zhuowen Zou, Che-Kai Liu, Hussam Amrouch, Mohsen Imani:
HDGIM: Hyperdimensional Genome Sequence Matching on Unreliable highly scaled FeFET. DATE 2023: 1-6 - Diogo Pratas, Armando J. Pinho:
JARVIS2: a data compressor for large genome sequences. DCC 2023: 288-297 - Alberto Zeni, Guido Walter Di Donato, Alessia Della Valle, Filippo Carloni, Marco D. Santambrogio:
On the Genome Sequence Alignment FPGA Acceleration via KSW2z. ISCAS 2023: 1-5 - Max Doblas, Oscar Lostes-Cazorla, Quim Aguado-Puig, Nick Cebry, Pau Fontova-Musté, Christopher Frances Batten, Santiago Marco-Sola, Miquel Moretó:
GMX: Instruction Set Extensions for Fast, Scalable, and Efficient Genome Sequence Alignment. MICRO 2023: 1466-1480 - Rajesh Dwivedi, Aruna Tiwari, Neha Bharill, Milind B. Ratnaparkhe, Abhishek Tripathi, Preeti Jha:
A Novel Feature Extraction Approach for the Clustering and Classification of Genome Sequences. SSCI 2023: 1018-1023 - Hanning Chen, Yeseong Kim, Elaheh Sadredini, Saransh Gupta, Hugo Latapie, Mohsen Imani:
Sparsity Controllable Hyperdimensional Computing for Genome Sequence Matching Acceleration. VLSI-SoC 2023: 1-6 - Manas Jyoti Das, Khawar Shehzad, Praveen Rao:
A Dataset of Network Traffic Collected During Large-Scale Human Genome Sequence Analysis. IEEE DataPort, 2023
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