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ORCIDHamid Mohamadi
- > Home > Persons > Hamid Mohamadi
Publications
- 2022
[j12]Parham Kazemi
, Johnathan Wong, Vladimir Nikolic, Hamid Mohamadi, René L. Warren, Inanç Birol:
ntHash2: recursive spaced seed hashing for nucleotide sequences. Bioinform. 38(20): 4812-4813 (2022)- 2020
- [j11]Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah Yeo, Inanç Birol:
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters. Proc. Natl. Acad. Sci. USA 117(29): 16961-16968 (2020) - 2019
- [j10]René L. Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones, Jean Bousquet, Jörg Bohlmann, Inanç Birol:
ntEdit: scalable genome sequence polishing. Bioinform. 35(21): 4430-4432 (2019) - 2018
- [j9]Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol:
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data. Bioinform. 34(10): 1697-1704 (2018) - [j8]Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol:
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19(1): 393:1-393:10 (2018) - [c6]Inanç Birol, Hamid Mohamadi, Justin Chu:
ntPack: A Software Package for Big Data in Genomics. BDCAT 2018: 41-50 - 2017
- [j7]Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol:
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art. Bioinform. 33(8): 1261-1270 (2017) - [j6]Hamid Mohamadi, Hamza Khan, Inanç Birol:
ntCard: a streaming algorithm for cardinality estimation in genomics data. Bioinform. 33(9): 1324-1330 (2017) - 2016
- [j5]Hamid Mohamadi, Justin Chu, Benjamin P. Vandervalk, Inanç Birol:
ntHash: recursive nucleotide hashing. Bioinform. 32(22): 3492-3494 (2016) - 2014
- [j4]Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol:
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. Bioinform. 30(23): 3402-3404 (2014) - [c5]Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren:
Spaced seed data structures. BIBM 2014: 15-22 - [c4]Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol:
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. BIBM 2014: 51-58
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