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James C. Gee
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Publications
- 2015
- [j66]Benjamin M. Kandel, Danny J. J. Wang, John A. Detre, James C. Gee, Brian B. Avants:
Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction. NeuroImage 105: 156-170 (2015) - [j65]Nicholas J. Tustison, K. L. Shrinidhi, Max Wintermark, Christopher R. Durst, Benjamin M. Kandel, James C. Gee, Murray C. Grossman, Brian B. Avants:
Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR. Neuroinformatics 13(2): 209-225 (2015) - 2014
- [j64]Brian B. Avants, Nicholas J. Tustison, James C. Gee, Gang Song, Baohua Wu, Michael Stauffer:
The Insight ToolKit image registration framework. Frontiers Neuroinformatics 8: 44 (2014) - [j61]Daniel H. Adler, John Pluta, Salmon Kadivar, Caryne Craige, James C. Gee, Brian B. Avants, Paul A. Yushkevich:
Histology-derived volumetric annotation of the human hippocampal subfields in postmortem MRI. NeuroImage 84: 505-523 (2014) - [j60]Paramveer S. Dhillon, David A. Wolk, Sandhitsu R. Das, Lyle H. Ungar, James C. Gee, Brian B. Avants:
Subject-specific functional parcellation via Prior Based Eigenanatomy. NeuroImage 99: 14-27 (2014) - [j59]Nicholas J. Tustison, Philip A. Cook, Arno Klein, Gang Song, Sandhitsu R. Das, Jeffrey T. Duda, Benjamin M. Kandel, Niels van Strien, James R. Stone, James C. Gee, Brian B. Avants:
Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements. NeuroImage 99: 166-179 (2014) - [j58]Philip A. Cook, Corey T. McMillan, Brian B. Avants, Jonathan E. Peelle, James C. Gee, Murray Grossman:
Relating brain anatomy and cognitive ability using a multivariate multimodal framework. NeuroImage 99: 477-486 (2014) - [c138]Jue Wu, Manzar Ashtari, Laura M. Betancourt, Nancy L. Brodsky, Joan M. Giannetta, James C. Gee, Hallam Hurt, Brian B. Avants:
Cortical parcellation for neonatal brains. ISBI 2014: 1377-1380 - [c136]Benjamin M. Kandel, Danny J. J. Wang, James C. Gee, Brian B. Avants:
Single-Subject Structural Networks with Closed-Form Rotation Invariant Matching Improve Power in Developmental Studies of the Cortex. MICCAI (3) 2014: 137-144 - 2013
- [c135]Benjamin M. Kandel, David A. Wolk, James C. Gee, Brian B. Avants:
Predicting Cognitive Data from Medical Images Using Sparse Linear Regression. IPMI 2013: 86-97 - [c134]Gang Song, Yang Liu, Baohua Wu, Brian B. Avants, James C. Gee:
Using Region Trajectories to Construct an Accurate and Efficient Polyaffine Transform Model. IPMI 2013: 668-679 - [c128]Jeffrey T. Duda, John A. Detre, Junghoon J. Kim, James C. Gee, Brian B. Avants:
Fusing Functional Signals by Sparse Canonical Correlation Analysis Improves Network Reproducibility. MICCAI (3) 2013: 635-642 - [c127]Paramveer S. Dhillon, James C. Gee, Lyle H. Ungar, Brian B. Avants:
Anatomically-Constrained PCA for Image Parcellation. PRNI 2013: 25-28 - 2012
- [c126]Seung-Goo Kim, Brian B. Avants, Hyekyoung Lee, James C. Gee, Moo K. Chung, Richard J. Davidson, Jamie L. Hanson, Seth D. Pollak:
Agreement between the white matter connectivity based on the tensor-based morphometry and the volumetric white matter parcellations based on diffusion tensor imaging. ISBI 2012: 42-45 - [c125]Daniel H. Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C. Gee, Brian B. Avants, Paul A. Yushkevich:
Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI. ISBI 2012: 294-297 - [c123]Paramveer S. Dhillon, Brian B. Avants, Lyle H. Ungar, James C. Gee:
Partial sparse canonical correlation analysis (PSCCA) for population studies in medical imaging. ISBI 2012: 1132-1135 - [c121]Brian B. Avants, Paramveer S. Dhillon, Benjamin M. Kandel, Philip A. Cook, Corey McMillan, Murray Grossman, James C. Gee:
Eigenanatomy Improves Detection Power for Longitudinal Cortical Change. MICCAI (3) 2012: 206-213 - [c120]Brian B. Avants, Nicholas J. Tustison, Gang Song, Baohua Wu, Michael Stauffer, Matthew McCormick, Hans J. Johnson, James C. Gee:
A Unified Image Registration Framework for ITK. WBIR 2012: 266-275 - 2011
- [j55]Brian B. Avants, Nicholas J. Tustison, Gang Song, Philip A. Cook, Arno Klein, James C. Gee:
A reproducible evaluation of ANTs similarity metric performance in brain image registration. NeuroImage 54(3): 2033-2044 (2011) - [j54]Brian B. Avants, Nicholas J. Tustison, Jue Wu, Philip A. Cook, James C. Gee:
An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. Neuroinformatics 9(4): 381-400 (2011) - [j53]Nicholas J. Tustison, Brian B. Avants, Marcelo Siqueira, James C. Gee:
Topological Well-Composedness and Glamorous Glue: A Digital Gluing Algorithm for Topologically Constrained Front Propagation. IEEE Trans. Image Process. 20(6): 1756-1761 (2011) - [j50]Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim:
Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging 30(11): 1901-1920 (2011) - [c117]Seung-Goo Kim, Moo K. Chung, Jamie L. Hanson, Brian B. Avants, James C. Gee, Richard J. Davidson, Seth D. Pollak:
Structural connectivity via the tensor-based morphometry. ISBI 2011: 808-811 - 2010
- [j47]Hengyi Rao, Laura M. Betancourt, Joan M. Giannetta, Nancy L. Brodsky, Marc Korczykowski, Brian B. Avants, James C. Gee, Jiongjiong Wang, Hallam Hurt, John A. Detre, Martha J. Farah:
Early parental care is important for hippocampal maturation: Evidence from brain morphology in humans. NeuroImage 49(1): 1144-1150 (2010) - [j46]Brian B. Avants, Paul A. Yushkevich, John Pluta, David Minkoff, Marc Korczykowski, John A. Detre, James C. Gee:
The optimal template effect in hippocampus studies of diseased populations. NeuroImage 49(3): 2457-2466 (2010) - [j45]Brian B. Avants, Philip A. Cook, Lyle H. Ungar, James C. Gee, Murray Grossman:
Dementia induces correlated reductions in white matter integrity and cortical thickness: A multivariate neuroimaging study with sparse canonical correlation analysis. NeuroImage 50(3): 1004-1016 (2010) - [j44]Arno Klein, Satrajit S. Ghosh, Brian B. Avants, B. T. Thomas Yeo, Bruce Fischl, Babak A. Ardekani, James C. Gee, J. John Mann, Ramin V. Parsey:
Evaluation of volume-based and surface-based brain image registration methods. NeuroImage 51(1): 214-220 (2010) - [j42]Nicholas J. Tustison, Brian B. Avants, Philip A. Cook, Yuanjie Zheng, Alexander Egan, Paul A. Yushkevich, James C. Gee:
N4ITK: Improved N3 Bias Correction. IEEE Trans. Medical Imaging 29(6): 1310-1320 (2010) - [c109]Brian B. Avants, Philip A. Cook, Corey McMillan, Murray Grossman, Nicholas J. Tustison, Yuanjie Zheng, James C. Gee:
Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging. MICCAI (1) 2010: 324-331 - 2009
- [j40]Paul A. Yushkevich, Brian B. Avants, John Pluta, Sandhitsu R. Das, David Minkoff, Dawn Mechanic-Hamilton, Simon Glynn, Stephen Pickup, Weixia Liu, James C. Gee, Murray Grossman, John A. Detre:
A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398 (2009) - [j39]Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee:
Registration based cortical thickness measurement. NeuroImage 45(3): 867-879 (2009) - [j38]Arno Klein, Jesper L. R. Andersson, Babak A. Ardekani, John Ashburner, Brian B. Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James C. Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul M. Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey:
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage 46(3): 786-802 (2009) - [j37]Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Directly Manipulated Free-Form Deformation Image Registration. IEEE Trans. Image Process. 18(3): 624-635 (2009) - 2008
- [j35]Brian B. Avants, Charles L. Epstein, Murray Grossman, James C. Gee:
Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain. Medical Image Anal. 12(1): 26-41 (2008) - [j34]Junghoon J. Kim, Brian B. Avants, Sunil Patel, John Whyte, H. Branch Coslett, John Pluta, John A. Detre, James C. Gee:
Structural consequences of diffuse traumatic brain injury: A large deformation tensor-based morphometry study. NeuroImage 39(3): 1014-1026 (2008) - [c98]Jeffrey T. Duda, Brian B. Avants, Junghoon J. Kim, Hui Zhang, Sunil Patel, John Whyte, James C. Gee:
Multivariate analysis of thalamo-cortical connectivity loss in TBI. CVPR Workshops 2008: 1-8 - [c95]Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, Stephen Pickup, Weixia Liu, John A. Detre, Murray Grossman, James C. Gee:
Building an atlas of hippocampal subfields using postmortem MRI. ISBI 2008: 161-164 - [c93]Sandhitsu R. Das, Dawn Mechanic-Hamilton, Marc Korczykowski, Brian B. Avants, John A. Detre, James C. Gee, Paul A. Yushkevich:
Spatial correspondence based asymmetry analysis in FMRI. ISBI 2008: 616-619 - [c89]Hui Sun, Brian B. Avants, Alejandro F. Frangi, Sebastián Ordas, James C. Gee, Paul A. Yushkevich:
Branching medial models for cardiac shape representation. ISBI 2008: 1485-1488 - [c87]Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee:
Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. MICCAI (1) 2008: 510-517 - [c85]Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich:
Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis. MICCAI (2) 2008: 766-773 - 2007
- [j29]Yong Fan, Hengyi Rao, Hallam Hurt, Joan M. Giannetta, Marc Korczykowski, David Shera, Brian B. Avants, James C. Gee, Jiongjiong Wang, Dinggang Shen:
Multivariate examination of brain abnormality using both structural and functional MRI. NeuroImage 36(4): 1189-1199 (2007) - [j27]Lydia Ng, Sayan D. Pathak, Chihchau Kuan, Christopher Lau, Hong-wei Dong, Andrew Sodt, Chinh Dang, Brian B. Avants, Paul A. Yushkevich, James C. Gee, David R. Haynor, Ed S. Lein, Allan Jones, Michael Hawrylycz:
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain. IEEE ACM Trans. Comput. Biol. Bioinform. 4(3): 382-393 (2007) - [j23]Hui Zhang, Brian B. Avants, Paul A. Yushkevich, John H. Woo, Sumei Wang, L. F. McCluskey, L. B. Elman, Elias R. Melhem, James C. Gee:
High-Dimensional Spatial Normalization of Diffusion Tensor Images Improves the Detection of White Matter Differences: An Example Study Using Amyotrophic Lateral Sclerosis. IEEE Trans. Medical Imaging 26(11): 1585-1597 (2007) - [c84]Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee:
Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation. ICCV 2007: 1-8 - [c83]Gang Song, Brian B. Avants, James C. Gee:
Multi-start Method with Prior Learning for Image Registration. ICCV 2007: 1-8 - [c82]Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Improved FFD B-Spline Image Registration. ICCV 2007: 1-8 - [c77]Brian B. Avants, Charles L. Epstein, James C. Gee:
Symmetric Shape Averaging in the Diffeomorphic Space. ISBI 2007: 636-639 - [c74]Brian B. Avants, Chivon Anderson, Murray Grossman, James C. Gee:
Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia. MICCAI (2) 2007: 303-310 - [c73]Brian B. Avants, Jeffrey T. Duda, Hui Zhang, James C. Gee:
Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies. MICCAI (1) 2007: 359-366 - 2006
- [j20]Brian B. Avants, P. Thomas Schoenemann, James C. Gee:
Lagrangian frame diffeomorphic image registration: Morphometric comparison of human and chimpanzee cortex. Medical Image Anal. 10(3): 397-412 (2006) - [c68]Brian B. Avants, Hallam Hurt, Joan M. Giannetta, Charles L. Epstein, Jiongjiong Wang, James C. Gee:
Analyzing Effects of Intra-Uterine Cocaine Exposure on Adolescent Brain Structure with Symmetric Diffeomorphisms. CVPR Workshops 2006: 94 - [c67]Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Adaptive graph cuts with tissue priors for brain MRI segmentation. ISBI 2006: 762-765 - [c66]Brian B. Avants, Charles L. Epstein, James C. Gee:
Geodesic Image Normalization and Temporal Parameterization in the Space of Diffeomorphisms. MIAR 2006: 9-16 - [c63]Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee:
Integrated Graph Cuts for Brain MRI Segmentation. MICCAI (2) 2006: 831-838 - [c62]Brian B. Avants, Murray Grossman, James C. Gee:
Symmetric Diffeomorphic Image Registration: Evaluating Automated Labeling of Elderly and Neurodegenerative Cortex and Frontal Lobe. WBIR 2006: 50-57 - [c61]Paul A. Yushkevich, Brian B. Avants, Lydia Ng, Michael Hawrylycz, Pablo D. Burstein, Hui Zhang, James C. Gee:
3D Mouse Brain Reconstruction from Histology Using a Coarse-to-Fine Approach. WBIR 2006: 230-237 - [c60]Nicholas J. Tustison, Brian B. Avants, Tessa A. Sundaram, Jeffrey T. Duda, James C. Gee:
A Generalization of Free-Form Deformation Image Registration Within the ITK Finite Element Framework. WBIR 2006: 238-246 - [p2]James C. Gee, Hui Zhang, Abraham Dubb, Brian B. Avants, Paul A. Yushkevich, Jeffrey T. Duda:
Anatomy-Based Visualizations of Diffusion Tensor Images of Brain White Matter. Visualization and Processing of Tensor Fields 2006: 155-163 - 2005
- [c57]Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, Olga Ciccarelli, Alan J. Thompson:
An Automated Approach to Connectivity-Based Partitioning of Brain Structures. MICCAI 2005: 164-171 - [c55]Tessa A. Sundaram, Brian B. Avants, James C. Gee:
Towards a Dynamic Model of Pulmonary Parenchymal Deformation: Evaluation of Methods for Temporal Reparameterization of Lung Data. MICCAI (2) 2005: 328-335 - [c53]Brian B. Avants, Charles L. Epstein, James C. Gee:
Geodesic Image Interpolation: Parameterizing and Interpolating Spatiotemporal Images. VLSM 2005: 247-258 - 2004
- [c50]Brian B. Avants, James C. Gee:
Symmetric Geodesic Shape Averaging and Shape Interpolation. ECCV Workshops CVAMIA and MMBIA 2004: 99-110 - [c48]Brian B. Avants, James C. Gee:
Shape Averaging with Diffeomorphic Flows for Atlas Creation. ISBI 2004: 595-598 - [c46]Tessa A. Sundaram, Brian B. Avants, James C. Gee:
A Dynamic Model of Average Lung Deformation Using Capacity-Based Reparameterization and Shape Averaging of Lung MR Images. MICCAI (2) 2004: 1000-1007 - 2003
- [j8]Abraham Dubb, Ruben C. Gur, Brian B. Avants, James C. Gee:
Characterization of sexual dimorphism in the human corpus callosum. NeuroImage 20(1): 512-519 (2003) - [c44]Brian B. Avants, James C. Gee:
The Shape Operator for Differential Analysis of Images. IPMI 2003: 101-113 - [c39]Brian B. Avants, James C. Gee:
Continuous Curve Matching with Scale-Space Curvature and Extrema-Based Scale Selection. Scale-Space 2003: 798-813 - [c38]Brian B. Avants, James C. Gee:
Formulation and Evaluation of Variational Curve Matching with Prior Constraints. WBIR 2003: 21-30 - 2002
- [c37]Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee:
Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. AMIA 2002 - [c35]Brian B. Avants, James C. Gee:
Robust rotations between anatomical curves. ISBI 2002: 337-340 - [c32]Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee:
Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. MICCAI (2) 2002: 381-388 - [c28]Brian B. Avants, James C. Gee:
Soft parametric curve matching in scale-space. Medical Imaging: Image Processing 2002 - 2001
- [c21]Brian B. Avants, Marcelo Siqueira, James C. Gee:
Computing Match Functions for Curves in R2 and R3 by Refining Polyline Approximations. MICCAI 2001: 1178-1179
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