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Kaizhong Zhang
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Publications
- 2022
- [c64]Fang Han, Baozhen Shan, Kaizhong Zhang:
De novo sequencing of multiple SILAC-based tandem mass spectra. ICCI*CC 2022: 1-6 - 2019
- [j59]Weiping Sun, Yi Liu, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang:
An Improved Approach for N-Linked Glycan Structure Identification from HCD MS/MS Spectra. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 388-395 (2019) - [c62]Boyu Feng, Jinfei Wang, Kaizhong Zhang:
Patch-Based and Tensor-Patch-Based Dimension Reduction Methods for Hyperspectral Images. IGARSS 2019: 3364-3367 - 2018
- [j58]Weiping Sun, Yi Liu, Kaizhong Zhang:
An approach for N-linked glycan identification from MS/MS spectra by target-decoy strategy. Comput. Biol. Chem. 74: 391-398 (2018) - 2017
- [j57]Yi Liu, Weiping Sun, Baozhen Shan, Kaizhong Zhang:
DISC: DISulfide linkage Characterization from tandem mass spectra. Bioinform. 33(23): 3861-3870 (2017) - [j56]Zhewei Liang, Gilles A. Lajoie, Kaizhong Zhang:
NBPMF: Novel Peptide Mass Fingerprinting Based on Network Inference. Int. J. Cogn. Informatics Nat. Intell. 11(4): 41-65 (2017) - [j55]Yi Liu, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie:
An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra. IEEE ACM Trans. Comput. Biol. Bioinform. 14(2): 326-336 (2017) - [c61]Zhewei Liang, Gilles A. Lajoie, Kaizhong Zhang:
NBPMF: Novel network-based inference methods for peptide mass fingerprinting. IEEE ICCI*CC 2017: 213-219 - 2015
- [c59]Yi Liu, Weiping Sun, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang:
An Approach for Matching Mixture MS/MS Spectra with a Pair of Peptide Sequences in a Protein Database. ISBRA 2015: 223-234 - [c58]Weiping Sun, Gilles A. Lajoie, Bin Ma, Kaizhong Zhang:
A Novel Algorithm for Glycan de novo Sequencing Using Tandem Mass Spectrometry. ISBRA 2015: 320-330 - 2014
- [j53]Zhewei Liang, Kaizhong Zhang:
Algorithms for local similarity between forests. J. Comb. Optim. 27(1): 14-31 (2014) - [j52]Shihyen Chen, Kaizhong Zhang:
An improved algorithm for tree edit distance with applications for RNA secondary structure comparison. J. Comb. Optim. 27(4): 778-797 (2014) - [j51]Weiming Li, Bin Ma, Kaizhong Zhang:
Optimizing Spaced $k$-mer Neighbors for Efficient Filtration in Protein Similarity Search. IEEE ACM Trans. Comput. Biol. Bioinform. 11(2): 398-406 (2014) - [c57]Yi Liu, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie:
An Effective Algorithm for Peptide de novo Sequencing from Mixture MS/MS Spectra. ISBRA 2014: 126-137 - [i1]Shihyen Chen, Zhuozhi Wang, Kaizhong Zhang:
Pattern Matching and Local Alignment for RNA Structures. CoRR abs/1412.8246 (2014) - 2012
- [c56]Weiming Li, Bin Ma, Kaizhong Zhang:
Efficient filtration for similarity search with spaced k-mer neighbors. BIBM 2012: 1-6 - [c55]Zhewei Liang, Kaizhong Zhang:
Algorithms for Forest Local Similarity. COCOA 2012: 163-175 - 2010
- [j49]Nikhil Bansal, Moshe Lewenstein, Bin Ma, Kaizhong Zhang:
On the Longest Common Rigid Subsequence Problem. Algorithmica 56(2): 270-280 (2010) - [j47]Qing Sun, Deyun Zhang, Yifeng Fan, Kaizhong Zhang, Bin Ma:
Ancient Chinese zither (guqin) music recovery with support vector machine. ACM Journal on Computing and Cultural Heritage 3(2): 5:1-5:12 (2010) - 2009
- [j46]Shihyen Chen, Bin Ma, Kaizhong Zhang:
On the similarity metric and the distance metric. Theor. Comput. Sci. 410(24-25): 2365-2376 (2009) - [c53]Weiming Li, Bin Ma, Kaizhong Zhang:
Amino Acid Classification and Hash Seeds for Homology Search. BICoB 2009: 44-51 - [c52]Tieling Chen, Jinfei Wang, Kaizhong Zhang, William Tompkinson:
Edge Extraction with Gradient Directions. IPCV 2009: 165-169 - 2008
- [j45]Lusheng Wang, Kaizhong Zhang:
Space Efficient Algorithms for Ordered Tree Comparison. Algorithmica 51(3): 283-297 (2008) - [j44]Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie:
Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. J. Bioinform. Comput. Biol. 6(1): 77-91 (2008) - [j43]Bin Ma, Lei Xin, Kaizhong Zhang:
A new quartet approach for reconstructing phylogenetic trees: quartet joining method. J. Comb. Optim. 16(3): 293-306 (2008) - 2007
- [j42]Rolf Backofen, Shihyen Chen, Danny Hermelin, Gad M. Landau, Mikhail A. Roytberg, Oren Weimann, Kaizhong Zhang:
Locality and Gaps in RNA Comparison. J. Comput. Biol. 14(8): 1074-1087 (2007) - [j41]Sriram Chellappan, Wenjun Gu, Xiaole Bai, Dong Xuan, Bin Ma, Kaizhong Zhang:
Deploying Wireless Sensor Networks under Limited Mobility Constraints. IEEE Trans. Mob. Comput. 6(10): 1142-1157 (2007) - [c51]Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie:
Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. APBC 2007: 297-306 - [c50]Shihyen Chen, Bin Ma, Kaizhong Zhang:
The Normalized Similarity Metric and Its Applications. BIBM 2007: 172-180 - [c49]Lei Xin, Bin Ma, Kaizhong Zhang:
A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method. COCOON 2007: 40-50 - [c48]Shihyen Chen, Kaizhong Zhang:
An Improved Algorithm for Tree Edit Distance Incorporating Structural Linearity. COCOON 2007: 482-492 - [e1]Bin Ma, Kaizhong Zhang:
Combinatorial Pattern Matching, 18th Annual Symposium, CPM 2007, London, Canada, July 9-11, 2007, Proceedings. Lecture Notes in Computer Science 4580, Springer 2007, ISBN 978-3-540-73436-9 [contents] - 2006
- [j40]Bin Ma, Lieyu Wu, Kaizhong Zhang:
Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. J. Bioinform. Comput. Biol. 4(3): 709-720 (2006) - [j39]Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang:
RNA-RNA Interaction Prediction and Antisense RNA Target Search. J. Comput. Biol. 13(2): 267-282 (2006) - [j38]Zimao Li, Lusheng Wang, Kaizhong Zhang:
Algorithmic approaches for genome rearrangement: a review. IEEE Trans. Syst. Man Cybern. Syst. 36(5): 636-648 (2006) - [c46]Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler:
RNA Secondary Structure Prediction Via Energy Density Minimization. RECOMB 2006: 130-142 - 2005
- [j37]Yonghua Han, Bin Ma, Kaizhong Zhang:
An automata approach to match gapped sequence tags against protein database. Int. J. Found. Comput. Sci. 16(3): 487-497 (2005) - [j36]Zhuozhi Wang, Kaizhong Zhang:
Multiple Rna Structure Alignment. J. Bioinform. Comput. Biol. 3(3): 609-626 (2005) - [j35]Yonghua Han, Bin Ma, Kaizhong Zhang:
Spider: Software for Protein Identification from Sequence Tags with de Novo Sequencing Error. J. Bioinform. Comput. Biol. 3(3): 697-716 (2005) - [j34]Bin Ma, Kaizhong Zhang, Chengzhi Liang:
An effective algorithm for peptide de novo sequencing from MS/MS spectra. J. Comput. Syst. Sci. 70(3): 418-430 (2005) - [c45]Bin Ma, Kaizhong Zhang:
On the Longest Common Rigid Subsequence Problem. CPM 2005: 11-20 - [c44]Bin Ma, Lieyu Wu, Kaizhong Zhang:
Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. International Conference on Computational Science (2) 2005: 960-967 - [c43]Jinfei Wang, Tieling Chen, Kaizhong Zhang, William Tompkinson:
Applying a wavelet method and linda for extracting detailed cartographic features from high resolution images. IGARSS 2005: 3905-3908 - [c42]Lusheng Wang, Kaizhong Zhang:
Space Efficient Algorithms for Ordered Tree Comparison. ISAAC 2005: 380-391 - [c41]Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang:
RNA-RNA Interaction Prediction and Antisense RNA Target Search. RECOMB 2005: 152-171 - 2004
- [j31]Lucian Ilie, Sheng Yu, Kaizhong Zhang:
Word Complexity And Repetitions In Words. Int. J. Found. Comput. Sci. 15(1): 41-55 (2004) - [j30]Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang:
The longest common subsequence problem for arc-annotated sequences. J. Discrete Algorithms 2(2): 257-270 (2004) - [c40]Yonghua Han, Bin Ma, Kaizhong Zhang:
SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. CSB 2004: 206-215 - [c39]Zhuozhi Wang, Kaizhong Zhang:
Multiple RNA Structure Alignment. CSB 2004: 246-254 - [c37]Yonghua Han, Bin Ma, Kaizhong Zhang:
An Automata Approach to Match Gapped Sequence Tags Against Protein Database. CIAA 2004: 167-177 - 2003
- [c36]Bin Ma, Zhuozhi Wang, Kaizhong Zhang:
Alignment between Two Multiple Alignments. CPM 2003: 254-265 - [c35]Bin Ma, Kaizhong Zhang, Chengzhi Liang:
An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum. CPM 2003: 266-277 - 2002
- [j29]Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang:
A General Edit Distance between RNA Structures. J. Comput. Biol. 9(2): 371-388 (2002) - [j27]Bin Ma, Lusheng Wang, Kaizhong Zhang:
Computing similarity between RNA structures. Theor. Comput. Sci. 276(1-2): 111-132 (2002) - [c34]Lucian Ilie, Sheng Yu, Kaizhong Zhang:
Repetition Complexity of Words. COCOON 2002: 320-329 - [c33]Lucian Ilie, Sheng Yu, Kaizhong Zhang:
Repetition Complexity of Words. DCFS 2002: 36 - [c32]Tieling Chen, Jinfei Wang, Kaizhong Zhang:
A wavelet transform based method for road extraction from high-resolution remotely sensed data. IGARSS 2002: 3369-3371 - 2001
- [j24]Lusheng Wang, Kaizhong Zhang, Louxin Zhang:
Perfect Phylogenetic Networks with Recombination. J. Comput. Biol. 8(1): 69-78 (2001) - [c30]Zhuozhi Wang, Kaizhong Zhang:
Alignment between Two RNA Structures. MFCS 2001: 690-702 - [c29]Guohui Lin, Bin Ma, Kaizhong Zhang:
Edit distance between two RNA structures. RECOMB 2001: 211-220 - [c28]Lusheng Wang, Kaizhong Zhang, Louxin Zhang:
Perfect phylogenetic networks with recombination. SAC 2001: 46-50 - 2000
- [c27]Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang:
The Longest Common Subsequence Problem for Arc-Annotated Sequences. CPM 2000: 154-165 - 1999
- [c25]Zhuozhi Wang, Kaizhong Zhang:
Finding Common RNA Secondary Structures from RNA Sequences. CPM 1999: 258-269 - [c24]Kaizhong Zhang, Lusheng Wang, Bin Ma:
Computing Similarity between RNA Structures. CPM 1999: 281-293 - 1996
- [j18]Jinfei Wang, Kaizhong Zhang:
Linear Cartographic Data Acquisition from Scanned Topographic Maps. Ann. GIS 2(1&2): 12-23 (1996) - [j17]Shouwen Tang, Kaizhong Zhang, Xiaolin Wu:
Fast Algorithms for Minimum Matrix Norm with Application in Computer Graphics. Algorithmica 15(1): 68-81 (1996) - [j15]Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang:
On the Complexity of Comparing Evolutionary Trees. Discret. Appl. Math. 71(1-3): 153-169 (1996) - 1995
- [j11]Tao Jiang, Lusheng Wang, Kaizhong Zhang:
Alignment of Trees - An Alternative to Tree Edit. Theor. Comput. Sci. 143(1): 137-148 (1995) - [j10]Jinfei Wang, Kaizhong Zhang, Shouwen Tang:
Spectral and spatial decorrelation of Landsat-TM data for lossless compression. IEEE Trans. Geosci. Remote. Sens. 33(5): 1277-1285 (1995) - [c16]Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang:
On the Complexity of Comparing Evolutionary Trees (Extended Abstract). CPM 1995: 177-190 - 1994
- [j9]Kaizhong Zhang, Tao Jiang:
Some MAX SNP-Hard Results Concerning Unordered Labeled Trees. Inf. Process. Lett. 49(5): 249-254 (1994) - [c13]Tao Jiang, Lusheng Wang, Kaizhong Zhang:
Alignment of Trees - An Alternative to Tree Edit. CPM 1994: 75-86 - [c12]Shouwen Tang, Kaizhong Zhang, Xiaolin Wu:
Matching with Matrix Norm Minimization. CPM 1994: 250-258 - [c11]Xiaolin Wu, Kaizhong Zhang:
A Subjective Distortion Measure for Vector Quantization. Data Compression Conference 1994: 22-31 - 1993
- [j5]Xiaolin Wu, Kaizhong Zhang:
Quantizer monotonicities and globally optimal scalar quantizer design. IEEE Trans. Inf. Theory 39(3): 1049-1053 (1993) - 1992
- [c4]Andrew Szilard, Sheng Yu, Kaizhong Zhang, Jeffrey O. Shallit:
Characterizing Regular Languages with Polynomial Densities. MFCS 1992: 494-503 - 1991
- [c3]Xiaolin Wu, Kaizhong Zhang:
A Better Tree-Structured Vector Quantizer. Data Compression Conference 1991: 392-401
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