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Ali Masoudi-Nejad
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Publications
- 2023
- [j21]Zahra Ghorbanali, Fatemeh Zare-Mirakabad, Najmeh Salehi, Mohammad Akbari, Ali Masoudi-Nejad:
DrugRep-HeSiaGraph: when heterogenous siamese neural network meets knowledge graphs for drug repurposing. BMC Bioinform. 24(1): 374 (2023) - [j20]Zahra Ghorbanali, Fatemeh Zare-Mirakabad, Mohammad Akbari, Najmeh Salehi, Ali Masoudi-Nejad:
DrugRep-KG: Toward Learning a Unified Latent Space for Drug Repurposing Using Knowledge Graphs. J. Chem. Inf. Model. 63(8): 2532-2545 (2023) - 2021
- [j18]Vahid Ghafarpour, Mohammad Khansari, Ali Mohammad Banaei-Moghaddam, Ali Najafi, Ali Masoudi-Nejad:
DNA methylation association with stage progression of head and neck squamous cell carcinoma. Comput. Biol. Medicine 134: 104473 (2021) - 2019
- [j12]Ali Khosravi, Morteza Kouhsar, Bahram Goliaei, B. Jayaram, Ali Masoudi-Nejad:
Systematic analysis of genes and diseases using PheWAS-Associated networks. Comput. Biol. Medicine 109: 311-321 (2019) - 2018
- [j10]Fariba Dehghanian, Zohreh Hojati, Nazanin Hosseinkhan, Zaynab Mousavian, Ali Masoudi-Nejad:
Reconstruction of the genome-scale co-expression network for the Hippo signaling pathway in colorectal cancer. Comput. Biol. Medicine 99: 76-84 (2018) - [j9]Sadegh Sulaimany, Mohammad Khansari, Ali Masoudi-Nejad:
Link prediction potentials for biological networks. Int. J. Data Min. Bioinform. 20(2): 161-184 (2018) - 2017
- [j8]Hossein Seidkhani, Andrey R. Nikolaev, Radha Nila Meghanathan, Hamid Pezeshk, Ali Masoudi-Nejad, Cees van Leeuwen:
Task modulates functional connectivity networks in free viewing behavior. NeuroImage 159: 289-301 (2017) - 2016
- [j7]Morteza Kouhsar, Zahra Razaghi-Moghadam, Zaynab Mousavian, Ali Masoudi-Nejad:
CeFunMO: A centrality based method for discovering functional motifs with application in biological networks. Comput. Biol. Medicine 76: 154-159 (2016) - 2013
- [j5]Sedigheh Mahdavi, Ali Salehzadeh-Yazdi, Ali Mohades, Ali Masoudi-Nejad:
Computational structure analysis of biomacromolecule complexes by interface geometry. Comput. Biol. Chem. 47: 16-23 (2013) - [j4]Isar Nassiri, Ali Masoudi-Nejad, Mahdi Jalili, Ali Moeini:
Normalized Similarity Index: An adjusted index to prioritize article citations. J. Informetrics 7(1): 91-98 (2013) - [c4]Iman Sharafuddin, Mehrdad Mirzaei, Masoud Rahgozar, Ali Masoudi-Nejad:
Protein-Protein Interaction Network Clustering Using Particle Swarm Optimization. IWBBIO 2013: 317-324 - 2012
- [c3]Ali Salehzadeh-Yazdi, Ali Masoudi-Nejad, Ali Akbar Saboury, Shiva Akbari-Birgani:
Hubs and Non-hubs in Protein-Protein Interaction Networks: A Biophysical Interpretation. DEXA Workshops 2012: 231-232 - 2010
- [c2]Hamid Ravaee, Ali Masoudi-Nejad, Saeed Omidi, Ali Moeini:
Improved Immune Genetic Algorithm for Clustering Protein-Protein Interaction Network. BIBE 2010: 174-179 - [p2]Saeed Omidi, Ali Masoudi-Nejad:
Network Evolution: Theory and Mechanisms. Computational Social Network Analysis 2010: 191-240 - 2009
- [j2]Zahra Razaghi Moghadam Kashani, Hayedeh Ahrabian, Elahe Elahi, Abbas Nowzari-Dalini, Elnaz Saberi Ansari, Sahar Asadi, Shahin Mohammadi, Falk Schreiber, Ali Masoudi-Nejad:
Kavosh: a new algorithm for finding network motifs. BMC Bioinform. 10: 318 (2009) - [p1]Bahman Yari Saeed Khanloo, Daryanaz Dargahi, Nima Aghaeepour, Ali Masoudi-Nejad:
Support Vector Clustering: From Local Constraint to Global Stability. Foundations of Computational Intelligence (6) 2009: 209-227
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