BibTeX records: Sven Thiele

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@article{DBLP:journals/bioinformatics/ThieleKBSK22,
  author       = {Sven Thiele and
                  Axel von Kamp and
                  Pavlos Stephanos Bekiaris and
                  Philipp Schneider and
                  Steffen Klamt},
  title        = {CNApy: a CellNetAnalyzer {GUI} in Python for analyzing and designing
                  metabolic networks},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {5},
  pages        = {1467--1469},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btab828},
  doi          = {10.1093/BIOINFORMATICS/BTAB828},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ThieleKBSK22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ThieleHHBFSK19,
  author       = {Sven Thiele and
                  Sandra Heise and
                  Wiebke Hessenkemper and
                  Hannes Bongartz and
                  Melissa Fensky and
                  Fred Schaper and
                  Steffen Klamt},
  title        = {Designing Optimal Experiments to Discriminate Interaction Graph Models},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {16},
  number       = {3},
  pages        = {925--935},
  year         = {2019},
  url          = {https://doi.org/10.1109/TCBB.2018.2812184},
  doi          = {10.1109/TCBB.2018.2812184},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/ThieleHHBFSK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PrigentFDTLCGGE17,
  author       = {Sylvain Prigent and
                  Cl{\'{e}}mence Frioux and
                  Simon M. Dittami and
                  Sven Thiele and
                  Abdelhalim Larhlimi and
                  Guillaume Collet and
                  Fabien Gutknecht and
                  Jeanne Got and
                  Damien Eveillard and
                  J{\'{e}}r{\'{e}}mie Bourdon and
                  Fr{\'{e}}d{\'{e}}ric Plewniak and
                  Thierry Tonon and
                  Anne Siegel},
  title        = {Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide
                  Metabolic Networks},
  journal      = {PLoS Comput. Biol.},
  volume       = {13},
  number       = {1},
  year         = {2017},
  url          = {https://doi.org/10.1371/journal.pcbi.1005276},
  doi          = {10.1371/JOURNAL.PCBI.1005276},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/PrigentFDTLCGGE17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThieleCSSGK15,
  author       = {Sven Thiele and
                  Luca Cerone and
                  Julio Saez{-}Rodriguez and
                  Anne Siegel and
                  Carito Guziolowski and
                  Steffen Klamt},
  title        = {Extended notions of sign consistency to relate experimental data to
                  signaling and regulatory network topologies},
  journal      = {{BMC} Bioinform.},
  volume       = {16},
  pages        = {345:1--345:13},
  year         = {2015},
  url          = {https://doi.org/10.1186/s12859-015-0733-7},
  doi          = {10.1186/S12859-015-0733-7},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ThieleCSSGK15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/VidelaGETGNSSS15,
  author       = {Santiago Videla and
                  Carito Guziolowski and
                  Federica Eduati and
                  Sven Thiele and
                  Martin Gebser and
                  Jacques Nicolas and
                  Julio Saez{-}Rodriguez and
                  Torsten Schaub and
                  Anne Siegel},
  title        = {Learning Boolean logic models of signaling networks with {ASP}},
  journal      = {Theor. Comput. Sci.},
  volume       = {599},
  pages        = {79--101},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.tcs.2014.06.022},
  doi          = {10.1016/J.TCS.2014.06.022},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcs/VidelaGETGNSSS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuziolowskiVETCSS14,
  author       = {Carito Guziolowski and
                  Santiago Videla and
                  Federica Eduati and
                  Sven Thiele and
                  Thomas Cokelaer and
                  Anne Siegel and
                  Julio Saez{-}Rodriguez},
  title        = {Exhaustively characterizing feasible logic models of a signaling network
                  using Answer Set Programming},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {13},
  pages        = {1942},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu357},
  doi          = {10.1093/BIOINFORMATICS/BTU357},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GuziolowskiVETCSS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuziolowskiVETCSS13,
  author       = {Carito Guziolowski and
                  Santiago Videla and
                  Federica Eduati and
                  Sven Thiele and
                  Thomas Cokelaer and
                  Anne Siegel and
                  Julio Saez{-}Rodriguez},
  title        = {Exhaustively characterizing feasible logic models of a signaling network
                  using Answer Set Programming},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {18},
  pages        = {2320--2326},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt393},
  doi          = {10.1093/BIOINFORMATICS/BTT393},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GuziolowskiVETCSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lpnmr/BordronEMST13,
  author       = {Philippe Bordron and
                  Damien Eveillard and
                  Alejandro Maass and
                  Anne Siegel and
                  Sven Thiele},
  editor       = {Pedro Cabalar and
                  Tran Cao Son},
  title        = {An {ASP} Application in Integrative Biology: Identification of Functional
                  Gene Units},
  booktitle    = {Logic Programming and Nonmonotonic Reasoning, 12th International Conference,
                  {LPNMR} 2013, Corunna, Spain, September 15-19, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8148},
  pages        = {206--218},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40564-8\_21},
  doi          = {10.1007/978-3-642-40564-8\_21},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/lpnmr/BordronEMST13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lpnmr/ColletEGPSST13,
  author       = {Guillaume Collet and
                  Damien Eveillard and
                  Martin Gebser and
                  Sylvain Prigent and
                  Torsten Schaub and
                  Anne Siegel and
                  Sven Thiele},
  editor       = {Pedro Cabalar and
                  Tran Cao Son},
  title        = {Extending the Metabolic Network of \emph{Ectocarpus Siliculosus} Using
                  Answer Set Programming},
  booktitle    = {Logic Programming and Nonmonotonic Reasoning, 12th International Conference,
                  {LPNMR} 2013, Corunna, Spain, September 15-19, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8148},
  pages        = {245--256},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40564-8\_25},
  doi          = {10.1007/978-3-642-40564-8\_25},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/lpnmr/ColletEGPSST13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/dnb/Thiele12,
  author       = {Sven Thiele},
  title        = {Modeling biological systems with Answer Set Programming},
  school       = {University of Potsdam},
  year         = {2012},
  url          = {http://opus.kobv.de/ubp/volltexte/2012/5938/},
  urn          = {urn:nbn:de:kobv:517-opus-59383},
  timestamp    = {Sat, 17 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/dnb/Thiele12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/VidelaGETGSS12,
  author       = {Santiago Videla and
                  Carito Guziolowski and
                  Federica Eduati and
                  Sven Thiele and
                  Niels Grabe and
                  Julio Saez{-}Rodriguez and
                  Anne Siegel},
  editor       = {David R. Gilbert and
                  Monika Heiner},
  title        = {Revisiting the Training of Logic Models of Protein Signaling Networks
                  with {ASP}},
  booktitle    = {Computational Methods in Systems Biology - 10th International Conference,
                  {CMSB} 2012, London, UK, October 3-5, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7605},
  pages        = {342--361},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33636-2\_20},
  doi          = {10.1007/978-3-642-33636-2\_20},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/VidelaGETGSS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1210-0690,
  author       = {Santiago Videla and
                  Carito Guziolowski and
                  Federica Eduati and
                  Sven Thiele and
                  Niels Grabe and
                  Julio Saez{-}Rodriguez and
                  Anne Siegel},
  title        = {Revisiting the Training of Logic Models of Protein Signaling Networks
                  with a Formal Approach based on Answer Set Programming},
  journal      = {CoRR},
  volume       = {abs/1210.0690},
  year         = {2012},
  url          = {http://arxiv.org/abs/1210.0690},
  eprinttype    = {arXiv},
  eprint       = {1210.0690},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1210-0690.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tplp/GebserSTV11,
  author       = {Martin Gebser and
                  Torsten Schaub and
                  Sven Thiele and
                  Philippe Veber},
  title        = {Detecting inconsistencies in large biological networks with answer
                  set programming},
  journal      = {Theory Pract. Log. Program.},
  volume       = {11},
  number       = {2-3},
  pages        = {323--360},
  year         = {2011},
  url          = {https://doi.org/10.1017/S1471068410000554},
  doi          = {10.1017/S1471068410000554},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tplp/GebserSTV11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ictai/GebserKSTV10,
  author       = {Martin Gebser and
                  Arne K{\"{o}}nig and
                  Torsten Schaub and
                  Sven Thiele and
                  Philippe Veber},
  title        = {The BioASP Library: {ASP} Solutions for Systems Biology},
  booktitle    = {22nd {IEEE} International Conference on Tools with Artificial Intelligence,
                  {ICTAI} 2010, Arras, France, 27-29 October 2010 - Volume 1},
  pages        = {383--389},
  publisher    = {{IEEE} Computer Society},
  year         = {2010},
  url          = {https://doi.org/10.1109/ICTAI.2010.62},
  doi          = {10.1109/ICTAI.2010.62},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ictai/GebserKSTV10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kr/GebserGISSTV10,
  author       = {Martin Gebser and
                  Carito Guziolowski and
                  Mihail Ivanchev and
                  Torsten Schaub and
                  Anne Siegel and
                  Sven Thiele and
                  Philippe Veber},
  editor       = {Fangzhen Lin and
                  Ulrike Sattler and
                  Miroslaw Truszczynski},
  title        = {Repair and Prediction (under Inconsistency) in Large Biological Networks
                  with Answer Set Programming},
  booktitle    = {Principles of Knowledge Representation and Reasoning: Proceedings
                  of the Twelfth International Conference, {KR} 2010, Toronto, Ontario,
                  Canada, May 9-13, 2010},
  publisher    = {{AAAI} Press},
  year         = {2010},
  url          = {http://aaai.org/ocs/index.php/KR/KR2010/paper/view/1334},
  timestamp    = {Tue, 08 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/kr/GebserGISSTV10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1007-0134,
  author       = {Martin Gebser and
                  Torsten Schaub and
                  Sven Thiele and
                  Philippe Veber},
  title        = {Detecting Inconsistencies in Large Biological Networks with Answer
                  Set Programming},
  journal      = {CoRR},
  volume       = {abs/1007.0134},
  year         = {2010},
  url          = {http://arxiv.org/abs/1007.0134},
  eprinttype    = {arXiv},
  eprint       = {1007.0134},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1007-0134.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclp/SchaubT09,
  author       = {Torsten Schaub and
                  Sven Thiele},
  editor       = {Patricia M. Hill and
                  David Scott Warren},
  title        = {Metabolic Network Expansion with Answer Set Programming},
  booktitle    = {Logic Programming, 25th International Conference, {ICLP} 2009, Pasadena,
                  CA, USA, July 14-17, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5649},
  pages        = {312--326},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02846-5\_27},
  doi          = {10.1007/978-3-642-02846-5\_27},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iclp/SchaubT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lpnmr/GebserKOST09,
  author       = {Martin Gebser and
                  Roland Kaminski and
                  Max Ostrowski and
                  Torsten Schaub and
                  Sven Thiele},
  editor       = {Esra Erdem and
                  Fangzhen Lin and
                  Torsten Schaub},
  title        = {On the Input Language of {ASP} Grounder Gringo},
  booktitle    = {Logic Programming and Nonmonotonic Reasoning, 10th International Conference,
                  {LPNMR} 2009, Potsdam, Germany, September 14-18, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5753},
  pages        = {502--508},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04238-6\_49},
  doi          = {10.1007/978-3-642-04238-6\_49},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/lpnmr/GebserKOST09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclp/GebserSTUV08,
  author       = {Martin Gebser and
                  Torsten Schaub and
                  Sven Thiele and
                  Bj{\"{o}}rn Usadel and
                  Philippe Veber},
  editor       = {Maria Garcia de la Banda and
                  Enrico Pontelli},
  title        = {Detecting Inconsistencies in Large Biological Networks with Answer
                  Set Programming},
  booktitle    = {Logic Programming, 24th International Conference, {ICLP} 2008, Udine,
                  Italy, December 9-13 2008, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5366},
  pages        = {130--144},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-89982-2\_19},
  doi          = {10.1007/978-3-540-89982-2\_19},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iclp/GebserSTUV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclp/GebserKKOST08,
  author       = {Martin Gebser and
                  Roland Kaminski and
                  Benjamin Kaufmann and
                  Max Ostrowski and
                  Torsten Schaub and
                  Sven Thiele},
  editor       = {Maria Garcia de la Banda and
                  Enrico Pontelli},
  title        = {Engineering an Incremental {ASP} Solver},
  booktitle    = {Logic Programming, 24th International Conference, {ICLP} 2008, Udine,
                  Italy, December 9-13 2008, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5366},
  pages        = {190--205},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-89982-2\_23},
  doi          = {10.1007/978-3-540-89982-2\_23},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iclp/GebserKKOST08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecsqaru/DelgrandeLST07,
  author       = {James P. Delgrande and
                  Daphne H. Liu and
                  Torsten Schaub and
                  Sven Thiele},
  editor       = {Khaled Mellouli},
  title        = {{COBA} 2.0: {A} Consistency-Based Belief Change System},
  booktitle    = {Symbolic and Quantitative Approaches to Reasoning with Uncertainty,
                  9th European Conference, {ECSQARU} 2007, Hammamet, Tunisia, October
                  31 - November 2, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4724},
  pages        = {78--90},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-75256-1\_10},
  doi          = {10.1007/978-3-540-75256-1\_10},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ecsqaru/DelgrandeLST07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lpnmr/GebserST07,
  author       = {Martin Gebser and
                  Torsten Schaub and
                  Sven Thiele},
  editor       = {Chitta Baral and
                  Gerhard Brewka and
                  John S. Schlipf},
  title        = {GrinGo : {A} New Grounder for Answer Set Programming},
  booktitle    = {Logic Programming and Nonmonotonic Reasoning, 9th International Conference,
                  {LPNMR} 2007, Tempe, AZ, USA, May 15-17, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4483},
  pages        = {266--271},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-72200-7\_24},
  doi          = {10.1007/978-3-540-72200-7\_24},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/lpnmr/GebserST07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecai/GressmannJMSTT06,
  author       = {Jean Gressmann and
                  Tomi Janhunen and
                  Robert E. Mercer and
                  Torsten Schaub and
                  Sven Thiele and
                  Richard Tichy},
  editor       = {Gerhard Brewka and
                  Silvia Coradeschi and
                  Anna Perini and
                  Paolo Traverso},
  title        = {On Probing and Multi-Threading in Platypus},
  booktitle    = {{ECAI} 2006, 17th European Conference on Artificial Intelligence,
                  August 29 - September 1, 2006, Riva del Garda, Italy, Including Prestigious
                  Applications of Intelligent Systems {(PAIS} 2006), Proceedings},
  series       = {Frontiers in Artificial Intelligence and Applications},
  volume       = {141},
  pages        = {392--396},
  publisher    = {{IOS} Press},
  year         = {2006},
  timestamp    = {Thu, 12 Feb 2009 12:51:20 +0100},
  biburl       = {https://dblp.org/rec/conf/ecai/GressmannJMSTT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lpnmr/GressmannJMSTT05,
  author       = {Jean Gressmann and
                  Tomi Janhunen and
                  Robert E. Mercer and
                  Torsten Schaub and
                  Sven Thiele and
                  Richard Tichy},
  editor       = {Chitta Baral and
                  Gianluigi Greco and
                  Nicola Leone and
                  Giorgio Terracina},
  title        = {Platypus: {A} Platform for Distributed Answer Set Solving},
  booktitle    = {Logic Programming and Nonmonotonic Reasoning, 8th International Conference,
                  {LPNMR} 2005, Diamante, Italy, September 5-8, 2005, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3662},
  pages        = {227--239},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11546207\_18},
  doi          = {10.1007/11546207\_18},
  timestamp    = {Tue, 14 May 2019 10:00:48 +0200},
  biburl       = {https://dblp.org/rec/conf/lpnmr/GressmannJMSTT05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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