Volume 8,
Number 1,
February 2001
- Gad M. Landau, Jeanette P. Schmidt, Dina Sokol:
An Algorithm for Approximate Tandem Repeats.
1-18
- Christopher Bailey-Kellogg, John J. Kelley, Clifford Stein, Bruce Randall Donald:
Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling.
19-36
- M. A. Newton, C. M. Kendziorski, C. S. Richmond, Frederick R. Blattner, K. W. Tsui:
On Differential Variability of Expression Ratios: Improving Statistical Inference about Gene Expression Changes from Microarray Data.
37-52
- David Liben-Nowell:
On the Structure of Syntenic Distance.
53-67
- Lusheng Wang, Kaizhong Zhang, Louxin Zhang:
Perfect Phylogenetic Networks with Recombination.
69-78
- Michael A. Charleston:
Hitch-Hiking: A Parallel Heuristic Search Strategy, Applied to the Phylogeny Problem.
79-91
Volume 8,
Number 2,
April 2001
Volume 8,
Number 3,
June 2001
Volume 8,
Number 4,
September 2002
- Stéphane Robin, Sophie Schbath:
Numerical Comparison of Several Approximations of the Word Count Distribution in Random Sequences.
349-359
- Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan:
On the Complexity of Positional Sequencing by Hybridization.
361-371
- Sabine Mercier, Jean-Jacques Daudin:
Exact Distribution for the Local Score of One i.i.d. Random Sequence.
373-380
- Claudine Devauchelle, Alexander Grossmann, Alain Hénaut, M. Holschneider, M. Monnerot, Jean-Loup Risler, Bruno Torrésani:
Rate Matrices for Analyzing Large Families of Protein Sequences.
381-399
- Dirk Husmeier, Frank Wright:
Detection of Recombination in DNA Multiple Alignments with Hidden Markov Models.
401-427
- Mattias Wahde, John A. Hertz:
Modeling Genetic Regulatory Dynamics in Neural Development.
429-442
- Andrew B. Goryachev, Pascale F. Macgregor, Aled M. Edwards:
Unfolding of Microarray Data.
443-461
Volume 8,
Number 5,
October 2001
- Semyon Kruglyak, Haixu Tang:
A New Estimator of Significance of Correlation in Time Series Data.
463-470
- Kuang Lin, Alex C. W. May, William R. Taylor:
Amino Acid Substitution Matrices from an Artificial Neural Network Model.
471-481
- David A. Bader, Bernard M. E. Moret, Mi Yan:
A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study.
483-491
- Stephen Muggleton, Christopher H. Bryant, Ashwin Srinivasan, Alex Whittaker, Simon Topp, Christopher J. Rawlings:
Are Grammatical Representations Useful for Learning from Biological Sequence Data? - A Case Study.
493-521
- Glenn A. Williams, Jonathan M. Dugan, Russ B. Altman:
Constrained Global Optimization for Estimating Molecular Structure from Atomic Distances.
523-548
- John D. Storey, David Siegmund:
Approximate P-Values for Local Sequence Alignments: Numerical Studies.
549-556
Volume 8,
Number 6,
November 2001
- David M. Rocke, Blythe Durbin:
A Model for Measurement Error for Gene Expression Arrays.
557-569
- Ting Chen, Jacob D. Jaffe, George M. Church:
Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry.
571-583
- Joachim Theilhaber, Steven Bushnell, Amanda Jackson, Rainer Fuchs:
Bayesian Estimation of Fold-Changes in the Analysis of Gene Expression: The PFOLD Algorithm.
585-614
- Winfried Just:
Computational Complexity of Multiple Sequence Alignment with SP-Score.
615-623
- Russell D. Wolfinger, Greg Gibson, Elizabeth D. Wolfinger, Lee Bennett, Hisham Hamadeh, Pierre R. Bushel, Cynthia A. Afshari, Richard S. Paules:
Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models.
625-637
- Keith A. Baggerly, Kevin R. Coombes, Kenneth R. Hess, David N. Stivers, Lynne V. Abruzzo, Wei Zhang:
Identifying Differentially Expressed Genes in cDNA Microarray Experiments.
639-659
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