Volume 6,
Number 1,
February 2008
- Narayanan Raghupathy, Rose Hoberman, Dannie Durand:
Two Plus Two Does not Equal Three: Statistical Tests for Multiple genome Comparison.
1-22
- Andrew Wei Xu:
The Distribution of Distances between Randomly Constructed genomes: Generating Function, Expectation, Variance and Limits.
23-36
- Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg:
Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees.
37-50
- Minghui Jiang, Ying Xu, Binhai Zhu:
Protein Structure-structure Alignment with Discrete FrÉchet Distance.
51-64
- V. Choi, Y. Huang, Vy Lam, D. Potter, Reinhard C. Laubenbacher, Karen Duca:
Using Formal Concept Analysis for microarray Data Comparison.
65-75
- Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie:
Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry.
77-91
- Ján Manuch, Daya Ram Gaur:
Fitting protein Chains to cubic Lattice is NP-Complete.
93-106
- Yury V. Bukhman, Moyez Dharsee, Rob M. Ewing, Peter Chu, Thodoros Topaloglou, Thierry Le Bihan, Theo Goh, Henry Duewel, Ian I. Stewart, Jacek R. Wisniewski, Nancy F. Ng:
Design and Analysis of Quantitative Differential Proteomics Investigations Using LC-MS Technology.
107-123
- S. Tewari, Jonathan Arnold, Suchendra M. Bhandarkar:
Likelihood of a Particular Order of Genetic Markers and the Construction of Genetic Maps.
125-162
- Xijiang Miao, Peter J. Waddell, Homayoun Valafar:
Tali: Local Alignment of protein Structures Using Backbone Torsion Angles.
163-181
- Yonggang Lu, Jing He, Charlie E. M. Strauss:
Deriving Topology and Sequence Alignment for the Helix Skeleton in Low-Resolution protein Density Maps.
183-201
- Cao D. Nguyen, Michael Mannino, Katheleen J. Gardiner, Krzysztof J. Cios:
CLusFCM: an Algorithm for Predicting protein Functions Using homologies and protein Interactions.
203-222
- Jianwen Fang, Yinghua Dong, Todd D. Williams, Gerald H. Lushington:
Feature Selection in Validating Mass Spectrometry Database Search Results.
223-240
- Jing Li, Tao Jiang:
A Survey on Haplotyping Algorithms for Tightly Linked Markers.
241-259
Volume 6,
Number 2,
April 2008
- Ao Yuan, Wenqing He:
Semiparametric Clustering Method for microarray Data Analysis.
261-282
- Feng Cui, Robert L. Jernigan, Zhijun Wu:
Knowledge-Based versus experimentally Acquired Distance and Angle Constraints for NMR Structure Refinement.
283-300
- Lev Klebanov, Xing Qiu, Andrei Yakovlev:
Testing Differential Expression in Nonoverlapping gene Pairs: a New Perspective for the Empirical Bayes Method.
301-316
- José Osorio y Fortéa, Éric Prina, Thierry Lang, Geneviève Milon, Clarisse Davory, Jean-Yves Coppée, Béatrice Regnault:
Affygcqc: a Web-Based Interface to Detect Outlying GeneChips with Extreme studentized Deviate Tests.
317-334
- Aleksandar Poleksic, Mark A. Fienup, Joseph F. Danzer, Derek A. Debe:
A Different Look at the Quality of Modeled Three-Dimensional protein Structures.
335-345
- Sheng Wang, Wei-Mou Zheng:
ClEPaps: Fast Pair Alignment of protein Structures Based on conformational Letters.
347-366
- Mario Huerta, Juan Cedano, Enrique Querol:
Analysis of Nonlinear Relations between Expression Profiles by the Principal Curves of Oriented-Points Approach.
367-386
- Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas:
Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes.
387-401
- Rafal Pokrzywa:
New Method for yeast Identification Using Burrows-wheeler Transform.
403-413
Volume 6,
Number 3,
June 2008
- Zeyar Aung, Soon-Heng Tan, See-Kiong Ng, Kian-Lee Tan:
Ppiclust: Efficient Clustering of 3D protein-protein Interaction Interfaces.
415-433
- Hon Nian Chua, Kang Ning, Wing-Kin Sung, Hon Wai Leong, Limsoon Wong:
Using Indirect protein-protein Interactions for protein Complex Prediction.
435-466
- Kang Ning, Nan Ye, Hon Wai Leong:
On Preprocessing and Antisymmetry in de novo peptide Sequencing: Improving Efficiency and Accuracy.
467-492
- Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Using Directed Information to Build Biologically Relevant Influence Networks.
493-519
- Zefeng Zhang, Hao Lin, Ming Li:
Mango: Multiple Alignment with n Gapped Oligos.
521-541
- Adriano Velasque Werhli, Dirk Husmeier:
Gene Regulatory Network Reconstruction by Bayesian Integration of Prior Knowledge and/or Different Experimental Conditions.
543-572
- Zheng Fu, Tao Jiang:
Clustering of Main orthologs for Multiple genomes.
573-584
- Kyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu:
Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays.
585-602
- Yonghui Wu, Lan Liu, Timothy J. Close, Stefano Lonardi:
Deconvoluting BAC-Gene Relationships Using a Physical Map.
603-622
- Sérgio A. de Carvalho, Sven Rahmann:
Better GeneChip microarray Layouts by Combining Probe Placement and Embedding.
623-641
Volume 6,
Number 4,
August 2008
- Andrei G. Yakovlev, Tatiana A. Shkuropatova, Lyudmila G. Vasilieva, Anatoli Ya. Shkuropatov, Vladimir A. Shuvalov:
Wave Packet Motions Coupled to electron Transfer in Reaction Centers of Chloroflexus Aurantiacus.
643-666
- Oxana V. Galzitskaya, Natalya S. Bogatyreva, Dmitry N. Ivankov:
Compactness Determines protein Folding Type.
667-680
- Oxana V. Galzitskaya:
Search for Folding Initiation Sites from amino acid Sequence.
681-691
- Alexei V. Finkelstein, Michael Y. Lobanov, Nikita V. Dovidchenko, Natalya S. Bogatyreva:
Many-Atom van der Waals Interactions lead to Direction-Sensitive Interactions of covalent bonds.
693-707
- Kirill Alexandrov, Boris Sobolev, Dmitry Filimonov, Vladimir Poroikov:
Recognition of protein Function Using the Local Similarity.
709-725
- Tatiana Tatarinova, John Bouck, Alan Schumitzky:
Kullback-Leibler Markov Chain Monte Carlo - a New Algorithm for Finite Mixture Analysis and its Application to Gene Expression Data.
727-746
- Daisuke Tominaga, Katsuhisa Horimoto:
Judgment Algorithm for Periodicity of Time Series Data Based on Bayesian Information Criterion.
747-757
- Alexander Y. Panchin, Sergei A. Spirin, Sergey A. Lukyanov, Yuri B. Lebedev, Yuri V. Panchin:
Human Trash ESTs - Sequences from cDNA Collection that are not Aligned to genome Assembly.
759-773
- Evgeniy Aksianov, Olga Zanegina, Alexander Grishin, Sergei A. Spirin, Anna Karyagina, Andrei Alexeevski:
Conserved water molecules in X-Ray Structures Highlight the Role of water in intramolecular and intermolecular Interactions.
775-788
- Zhengwei Zhu, Andrey Tovchigrechko, Tatiana Baronova, Ying Gao, Dominique Douguet, Nicholas O'Toole, Ilya A. Vakser:
Large-Scale Structural Modeling of protein complexes at Low Resolution.
789-810
- Alexander E. Ivliev, Marina G. Sergeeva:
Orthofocus: Program for Identification of orthologs in Multiple genomes in Family-Focused Studies.
811-824
- Jonas Gamalielsson, Björn Olsson:
Gene Ontology-Based Semantic Alignment of Biological Pathways by Evolutionary Search.
825-842
- Kirill Peskov, Igor Goryanin, Oleg V. Demin:
Kinetic Model of phosphofructokinase-1 from Escherichia coli.
843-867
- Natalia Sinitsina, Igor Orshansky, Olga Sokolova:
Actin-Binding proteins: How to Reveal the conformational Changes.
869-884
Volume 6,
Number 5,
October 2008
- Igor F. Tsigelny, Jerry Greenberg, Valentina Kouznetsova, Sanjay K. Nigam:
Modeling of glycerol-3-phosphate transporter suggests a Potential 'Tilt' Mechanism involved in its Function.
885-904
- Eli Kaminuma, Hiroshi Masuya, Ikuo Miura, Hiromi Motegi, Kenzi R. Takahasi, Miki Nakazawa, Minami Matsui, Yoichi Gondo, Tetsuo Noda, Toshihiko Shiroishi, Shigeharu Wakana, Tetsuro Toyoda:
Objective Evaluation Measures of Genetic Marker Selection in Large-Scale SNP genotyping.
905-917
- Tamara B. Sipes, Susan M. Freier:
Prediction of antisense oligonucleotide Efficacy Using Aggregate motifs.
919-932
- Kirill Peskov, Igor Goryanin, Klaus Prank, Frank Tobin, Oleg V. Demin:
Kinetic Modeling of ACE operon Genetic Regulation in Escherichia coli.
933-959
- André Fujita, João Ricardo Sato, Humberto Miguel Garay-Malpartida, Mari Cleide Sogayar, Carlos Eduardo Ferreira, Satoru Miyano:
Modeling Nonlinear Gene Regulatory Networks from Time Series Gene Expression Data.
961-979
- Xiu-Feng Wan, Mufit Ozden, Guohui Lin:
Ubiquitous Reassortments in influenza a viruses.
981-999
- Alberto J. M. Martin, Davide Baù, Alessandro Vullo, Ian Walsh, Gianluca Pollastri:
Long-Range Information and Physicality Constraints Improve predicted protein Contact Maps.
1001-1020
- Thomas K. F. Wong, Tak Wah Lam, Wanling Yang, Siu-Ming Yiu:
Finding Alternative Splicing Patterns with Strong Support from expressed Sequences on Individual exons/introns.
1021-1033
- Nikita V. Dovidchenko, Natalya S. Bogatyreva, Oxana V. Galzitskaya:
Prediction of Loop Regions in protein Sequence.
1035-1047
Volume 6,
Number 6,
December 2008
- Yonghui Wu, Stefano Lonardi:
A Linear-Time Algorithm for Predicting Functional Annotations from PPI Networks.
1049-1065
- Matteo Comin, Concettina Guerra, Giuseppe Zanotti:
Mining Overrepresented 3D Patterns of Secondary Structures in proteins.
1067-1087
- Ying Liu, Wenyuan Li:
Visualizing microarray Data for Biomarker Discovery by Matrix Reordering and Replicator Dynamics.
1089-1113
- Thanh Phuong Nguyen, Tu Bao Ho:
An Integrative Domain-Based Approach to Predicting protein-protein Interactions.
1115-1132
- Koki Tsukamoto, Tatsuya Yoshikawa, Yuichiro Hourai, Kazuhiko Fukui, Yutaka Akiyama:
Development of an Affinity Evaluation and Prediction System by Using the Shape complementarity Characteristic between proteins.
1133-1156
- Dominic Rose, Julian Jöris, Jörg Hackermüller, Kristin Reiche, Qiang Li, Peter F. Stadler:
Duplicated RNA genes in teleost Fish genomes.
1157-1175
- Nadezhda Sazonova, E. James Harner:
Haplotype Inference and Block Partitioning in Mixed Population Samples.
1177-1192
- Mihailo Kaplarevic, Alison E. Murray, Stephen C. Cary, Guang R. Gao:
Engenius - Environmental genome Informational Utility System.
1193-1211
Last update Mon Feb 13 04:51:27 2012
CET by the DBLP Team — 
Data released under the ODC-BY 1.0 license — See also our legal information page
