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ORCIDAlgorithms for Molecular Biology, Volume 11
Volume 11, 2016
- Henrike Indrischek
, Nicolas Wieseke, Peter F. Stadler, Sonja J. Prohaska:
The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies. 1 - Jean P. Zukurov, Sieberth do Nascimento-Brito, Angela C. Volpini, Guilherme C. Oliveira, Luiz Mario R. Janini, Fernando Antoneli:
Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage. 2 - Guillaume Holley, Roland Wittler, Jens Stoye:
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. 3 - Manuel Lafond, Riccardo Dondi, Nadia El-Mabrouk:
The link between orthology relations and gene trees: a correction perspective. 4 - Thomas D. Wu:
Bitpacking techniques for indexing genomes: I. Hash tables. 5 - Cinzia Pizzi:
MissMax: alignment-free sequence comparison with mismatches through filtering and heuristics. 6 - Sebastian Will, Hosna Jabbari:
Sparse RNA folding revisited: space-efficient minimum free energy structure prediction. 7 - Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler:
RNA folding with hard and soft constraints. 8 - Thomas D. Wu:
Bitpacking techniques for indexing genomes: II. Enhanced suffix arrays. 9 - Giles Miclotte, Mahdi Heydari, Piet Demeester, Stephane Rombauts, Yves Van de Peer, Pieter Audenaert, Jan Fostier:
Jabba: hybrid error correction for long sequencing reads. 10 - Songjian Lu, Gunasheil Mandava, Gaibo Yan, Xinghua Lu:
An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem. 11 - Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani:
Circular sequence comparison: algorithms and applications. 12 - Krister M. Swenson, Pijus Simonaitis, Mathieu Blanchette:
Models and algorithms for genome rearrangement with positional constraints. 13 - Rui Henriques, Sara C. Madeira:
BicNET: Flexible module discovery in large-scale biological networks using biclustering. 14 - Benjamin Drinkwater, Michael A. Charleston:
Towards sub-quadratic time and space complexity solutions for the dated tree reconciliation problem. 15 - Prabina Kumar Meher, Tanmaya Kumar Sahu, Atmakuri Ramakrishna Rao, Sant Wahi:
Identification of donor splice sites using support vector machine: a computational approach based on positional, compositional and dependency features. 16 - William R. Taylor:
An algorithm to parse segment packing in predicted protein contact maps. 17 - Jianbo Lu, Guoliang Xu, Shihua Zhang, Benzhuo Lu:
An effective sequence-alignment-free superpositioning of pairwise or multiple structures with missing data. 18 - Elizabeth T. Hobbs, Talmo Pereira, Patrick K. O'Neill, Ivan Erill:
A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data. 19 - Timo Beller, Enno Ohlebusch:
A representation of a compressed de Bruijn graph for pan-genome analysis that enables search. 20 - Roberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani:
Erratum to: Circular sequence comparison: algorithms and applications. 21 - Yelena Frid, Dan Gusfield:
An improved Four-Russians method and sparsified Four-Russians algorithm for RNA folding. 22 - Rui Henriques, Sara C. Madeira:
BiC2PAM: constraint-guided biclustering for biological data analysis with domain knowledge. 23 - Jérôme Ambroise, Jamal Badir, Louise Nienhaus, Annie Robert, Anne-France Dekairelle, Jean-Luc Gala:
Using a constraint-based regression method for relative quantification of somatic mutations in pyrosequencing signals: a case for NRAS analysis. 24 - Ricardo Andrade, Martin Wannagat, Cecilia Coimbra Klein, Vicente Acuña, Alberto Marchetti-Spaccamela, Paulo Vieira Milreu, Leen Stougie, Marie-France Sagot:
Enumeration of minimal stoichiometric precursor sets in metabolic networks. 25 - Jun Zhou, Yu Lin, Vaibhav Rajan, William Hoskins, Bing Feng, Jijun Tang:
Analysis of gene copy number changes in tumor phylogenetics. 26 - Sudhir Srivastava, Shashi Bhushan Lal, Dwijesh Chandra Mishra, Ulavappa B. Angadi, K. K. Chaturvedi, Shesh N. Rai, Anil Rai:
An efficient algorithm for protein structure comparison using elastic shape analysis. 27 - Timo Beller, Enno Ohlebusch:
Erratum to: A representation of a compressed de Bruijn graph for pan-genome analysis that enables search. 28:1-28:2
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