BSB 2005: Sao Leopoldo, Brazil

Invited Papers

• Irene S. Gabashvili, Richard J. Carter, Peter W. Markstein, Anne B. S. Giersch:
  Differential Gene Expression in the Auditory System. 1-8
  
• Walter L. Ruzzo:
  Searching for Non-coding RNA. 9-10
  
• Bruno W. S. Sobral:
  Cyberinfrastructure for PathoSystems Biology. 11-27
  
• Joel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder, Mark Gerstein:
  Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites. 28-29
  

Full Papers

• R. Nigam, S. Liang:
  Perturbing Thermodynamically Unfeasible Metabolic Networks. 30-41
  
• Ana Carolina Lorena, André Carlos Ponce Leon Ferreira de Carvalho:
  Protein Cellular Localization with Multiclass Support Vector Machines and Decision Trees. 42-53
  
• Eduardo J. Spinosa, André Carlos Ponce Leon Ferreira de Carvalho:
  Combining One-Class Classifiers for Robust Novelty Detection in Gene Expression Data. 54-64
  
• Katti Faceli, André Carlos Ponce Leon Ferreira de Carvalho, Marcílio Carlos Pereira de Souto:
  Evaluation of the Contents of Partitions Obtained with Clustering Gene Expression Data. 65-76
  
• Meika I. Monteiro, Marcílio Carlos Pereira de Souto, Luiz M. G. Gonçalves, Lucymara F. Agnez-Lima:
  Machine Learning Techniques for Predicting Bacillus subtilis Promoters. 77-84
  
• Adriana Neves dos Reis, Ney Lemke:
  An Improved Hidden Markov Model Methodology to Discover Prokaryotic Promoters. 85-94
  
• Marcelo Cezar Pinto, Luciana Foss, José C. M. Mombach, Leila Ribeiro:
  Modeling and Property Verification of Lactose Operon Regulation. 95-106
  
• Guilherme Balestieri Bedin, Ney Lemke:
  YAMONES: A Computational Architecture for Molecular Network Simulation. 107-117
  
• Cláudia Lemelle Fernandes, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza:
  Structure Prediction and Docking Studies of Chorismate Synthase from Mycobacterium Tuberculosis. 118-127
  
• Georgios Joannis Pappas Jr., Shankar Subramaniam:
  Analysis of the Effects of Multiple Sequence Alignments in Protein Secondary Structure Prediction. 128-140
  
• Maurício de Alvarenga Mudado, Estevam Bravo-Neto, José Miguel Ortega:
  Tests of Automatic Annotation Using KOG Proteins and ESTs from 4 Eukariotic Organisms. 141-152
  
• Francisco Prosdocimi, J. Miguel Ortega:
  Diet as a Pressure on the Amino Acid Content of Proteomes. 153-159
  
• Guilherme P. Telles, Marcelo M. Brigido, Nalvo F. Almeida, Carlos Juliano M. Viana, Daniel A. S. Anjos, Maria Emilia Telles Walter:
  A Method for Comparing Three Genomes. 160-169
  
• Miguel Galves, Zanoni Dias:
  Comparison of Genomic DNA to cDNA Alignment Methods. 170-180
  
• Elaine Ribeiro de Faria, Denise Guliato, Jean Carlo de Sousa Santos:
  Segmentation and Centromere Locating Methods Applied to Fish Chromosomes Images. 181-189
  

Extended Abstracts

• Florencia G. Leonardi, Antonio Galves:
  Sequence Motif Identification and Protein Family Classification Using Probabilistic Trees. 190-193
  
• Fabiano Pazzini, Fernanda Oliveira, Jorge A. Guimarães, Hermes Luís Neubauer de Amorim:
  Prediction of Myotoxic and Neurotoxic Activities in Phospholipases A2 from Primary Sequence Analysis. 194-197
  
• Thiago M. Venancio, Ricardo DeMarco, Katia C. P. Oliveira, Ana Carolina Quirino Simoes, Aline Maria da Silva, Sergio Verjovski-Almeida:
  Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project. 198-201
  
• Ana Carolina Quirino Simoes, Aline Maria da Silva, Sergio Verjovski-Almeida, Eduardo M. Reis:
  SAM Method as an Approach to Select Candidates for Human Prostate Cancer Markers. 202-205
  
• Christian Baudet, Zanoni Dias:
  New EST Trimming Strategy. 206-209
  
• Rodrigo de Castro Miranda, Mauricio Ayala-Rincón:
  A Modification of the Landau-Vishkin Algorithm Computing Longest Common Extensions via Suffix Arrays. 210-213
  
• Alan Wilter, Carla Osthoff, Cristiane Oliveira, Diego E. B. Gomes, Eduardo Hill, Laurent Emmanuel Dardenne, Patrícia M. Barros, Pedro A. A. G. L. Loureiro, Reynaldo Novaes, Pedro G. Pascutti:
  The BioPAUÁ Project: A Portal for Molecular Dynamics Using Grid Environment. 214-217
  
• Dino Franklin, Ivan da Silva Sendin:
  Analysis of Structure Prediction Tools in Mutated MeCP-2. 218-221
  
• Armando Vieira, Baldomero Oliva:
  Protein Loop Classification Using Artificial Neural Networks. 222-225
  
• Ricardo M. Czekster, Osmar Norberto de Souza:
  VIZ - A Graphical Open-Source Architecture for Use in Structural Bioinformatics. 226-229
  
• Ana L. C. Bazzan, Cássia Trojahn dos Santos:
  Selection of Data Sets of Motifs as Attributes in the Process of Automating the Annotation of Proteins' Keywords. 230-233
  
• Ardala Breda, Cláudia Lemelle Fernandes, Sabrina Esteves de Matos Almeida, Heitor Moreira Franco, Maria Lúcia Rosa Rossetti, Rosângela Rodrigues, Luís Fernando Brígido, Elizabeth Cortez-Herrera:
  Bioinformatics Tools for HIV-1 Identification in Southern Brazilian States. 234-237
  
• Luciano A. Digiampietri, Julia M. Perdigueiro, Aloisio J. de Almeida Junior, Daniel M. Faria, Eric H. Ostroski, Gustavo G. L. Costa, Marcelo C. Perez:
  Fact and Task Oriented System for Genome Assembly and Annotation. 238-241
  
• João Francisco Valiati, Paulo Martins Engel:
  A Clustering Strategy to Find Similarities in Mycoplasma Promoters. 242-245
  
• Said Sadique Adi, Carlos Eduardo Ferreira:
  Gene Prediction by Syntenic Alignment. 246-250
  
• Ilana de Almeida Souza, Claudiney Sanches Jr., André Luiz Miranda da Rosa, Patrícia Trautenmüller, Thiago Tognoli Lopes, Marcelo Knörich Zuffo:
  Real Time Immersive Visualization and Manipulation of the Visible Human Data Set. 251-256
  

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