7. WABI 2007: Philadelphia, PA, USA

• Pavel A. Pevzner:
  Shotgun Protein Sequencing. 1
  
• Evgeni Tsivtsivadze, Jorma Boberg, Tapio Salakoski:
  Locality Kernels for Protein Classification. 2-11
  
• Roy Varshavsky, Menachem Fromer, Amit Man, Michal Linial:
  When Less Is More: Improving Classification of Protein Families with a Minimal Set of Global Features. 12-24
  
• Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio:
  Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. 25-37
  
• Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka:
  Bringing Folding Pathways into Strand Pairing Prediction. 38-48
  
• Loredana M. Genovese, Filippo Geraci, Marco Pellegrini:
  A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage. 49-60
  
• Phil Hyoun Lee, Hagit Shatkay:
  Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies. 61-72
  
• Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
  Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. 73-84
  
• Pasi Rastas, Esko Ukkonen:
  Haplotype Inference Via Hierarchical Genotype Parsing. 85-97
  
• Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson:
  Seeded Tree Alignment and Planar Tanglegram Layout. 98-110
  
• Hadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller:
  Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion. 111-123
  
• Mukul S. Bansal, Oliver Eulenstein:
  An Omega(n²/log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem. 124-135
  
• Alberto Apostolico, Claudia Tagliacollo:
  Incremental Discovery of Irredundant Motif Bases in Time O(|Sigma| n² log n). 136-148
  
• Christina Boucher, Daniel G. Brown, Paul Church:
  A Graph Clustering Approach to Weak Motif Recognition. 149-160
  
• Hatice Gulcin Ozer, William C. Ray:
  Informative Motifs in Protein Family Alignments. 161-170
  
• Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang:
  Topology Independent Protein Structural Alignment. 171-182
  
• Giuseppe Nicosia, Giovanni Stracquadanio:
  Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure Prediction. 183-193
  
• Degui Zhi, Maxim Shatsky, Steven E. Brenner:
  Alignment-Free Local Structural Search by Writhe Decomposition. 194-195
  
• Xueyi Wang, Jack Snoeyink:
  Defining and Computing Optimum RMSD for Gapped Multiple Structure Alignment. 196-207
  
• Mihaela Pertea, Steven Salzberg:
  Using Protein Domains to Improve the Accuracy of Ab Initio Gene Finding. 208-215
  
• Lenwood S. Heath, Amrita Pati:
  Genomic Signatures in De Bruijn Chains. 216-227
  
• Pavel P. Kuksa, Vladimir Pavlovic:
  Fast Kernel Methods for SVM Sequence Classifiers. 228-239
  
• Rastislav Srámek, Brona Brejová, Tomás Vinar:
  On-Line Viterbi Algorithm for Analysis of Long Biological Sequences. 240-251
  
• Christopher James Langmead, Sumit Kumar Jha:
  Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. 252-264
  
• Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe:
  Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. 265-276
  
• Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff:
  Algorithms for the Extraction of Synteny Blocks from Comparative Maps. 277-288
  
• Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno:
  Computability of Models for Sequence Assembly. 289-301
  
• Jaime Davila, Sudha Balla, Sanguthevar Rajasekaran:
  Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data. 302-309
  
• Chunmei Liu, Yinglei Song, Louis W. Shapiro:
  RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. 310-322
  
• Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao:
  HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding. 323-334
  
• Axel Mosig, Julian J.-L. Chen, Peter F. Stadler:
  Homology Search with Fragmented Nucleic Acid Sequence Patterns. 335-345
  
• Lucian Ilie, Silvana Ilie:
  Fast Computation of Good Multiple Spaced Seeds. 346-358
  
• Eagu Kim, John D. Kececioglu:
  Inverse Sequence Alignment from Partial Examples. 359-370
  
• Maja Bucan:
  Novel Approaches in Psychiatric Genomics. 371
  
• Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu:
  The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries. 372-382
  
• Alexander Schliep, Roland Krause:
  Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach. 383-394
  
• Yonghui Wu, Prasanna Bhat, Timothy J. Close, Stefano Lonardi:
  Efficient and Accurate Construction of Genetic Linkage Maps from Noisy and Missing Genotyping Data. 395-406
  
• Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks:
  A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. 407-419
  
• Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan:
  Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation. 420-430
  

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