12. RECOMB 2008: Singapore
Martin Vingron, Limsoon Wong (Eds.): Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings. Springer 2008 Lecture Notes in Computer Science ISBN 978-3-540-78838-6
Temple F. Smith: Computational Biology: Its Challenges Past, Present, and Future. 1-2
Caroline C. Friedel, Jan Krumsiek, Ralf Zimmer: Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast. 3-16
Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen: CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads. 17-28
Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller: Reconstructing the Evolutionary History of Complex Human Gene Clusters. 29-49
Paul Medvedev, Michael Brudno: Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads. 50-64
Howard Cedar: Orchestration of DNA Methylation. 65
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Selen Uguroglu, Eric P. Xing: BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes. 66-81
Yanxin Shi, Itamar Simon, Tom Mitchell, Ziv Bar-Joseph: A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors. 82-97
Raluca Gordân, Leelavati Narlikar, Alexander J. Hartemink: A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery. 98-111
Edison T. Liu: Transcriptional Regulation and Cancer Genomics. 127
Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers: Automatic Recognition of Cells (ARC) for 3D Images of C. elegans. 128-139
Ritendra Datta, Marshall W. Bern: Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing. 140-153
Yu Lin, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu: A Fragmentation Event Model for Peptide Identification by Mass Spectrometry. 154-166
Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang: A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. 167-180
Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner: De Novo Sequencing of Nonribosomal Peptides. 181-195
Sang Yup Lee: Systems Metabolic Engineering. 196
Mustafa Kirac, Gultekin Özsoyoglu: Protein Function Prediction Based on Patterns in Biological Networks. 197-213
Jason Flannick, Antal F. Novak, Chuong B. Do, Balaji S. Srinivasan, Serafim Batzoglou: Automatic Parameter Learning for Multiple Network Alignment. 214-231
Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou: An Integrative Network Approach to Map the Transcriptome to the Phenome. 232-245
Maxim Kalaev, Vineet Bafna, Roded Sharan: Fast and Accurate Alignment of Multiple Protein Networks. 246-256
Michael Baym, Chris Bakal, Norbert Perrimon, Bonnie Berger: High-Resolution Modeling of Cellular Signaling Networks. 257-271
Andrei N. Lupas: At the Origin of Life: How Did Folded Proteins Evolve? 272
J. Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein: Locating Multiple Gene Duplications through Reconciled Trees. 273-284
Jing Zhang, Xin Gao, Jinbo Xu, Ming Li: Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information. 285-299
Wei Zheng, Alan M. Friedman, Chris Bailey-Kellogg: Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins. 300-314
Christophe Dessimoz, Daniel Margadant, Gaston H. Gonnet: DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework. 315-330
Sebastian Böcker, Katharina Jahn, Julia Mixtacki, Jens Stoye: Computation of Median Gene Clusters. 331-345
Suzanne Cory: BCL-2: From Translocation to Therapy. 346
Igor Ulitsky, Richard M. Karp, Ron Shamir: Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles. 347-359
Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vladimir Jojic, Guri Giaever, Andrew Emili, Gabe Musso, Robert Hegele: Constructing Treatment Portfolios Using Affinity Propagation. 360-371
Michael Sammeth, Gabriel Valiente, Roderic Guigó: Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. 372-395
Denis Smirnov, Vivian G. Cheung: Disruption of a Transcriptional Regulatory Pathway Contributes to Phenotypes in Carriers of Ataxia Telangiectasia. 410
Oliver Stegle, Anitha Kannan, Richard Durbin, John M. Winn: Accounting for Non-genetic Factors Improves the Power of eQTL Studies. 411-422
Andreas Sundquist, Eugene Fratkin, Chuong B. Do, Serafim Batzoglou: Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA. 423
Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan: On the Inference of Ancestries in Admixed Populations. 424-433
Eleazar Eskin: Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information. 434
Sivan Bercovici, Dan Geiger, Liran Shlush, Karl Skorecki, Alan Templeton: Panel Construction for Mapping in Admixed Populations Via Expected Mutual Information. 435-449
Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, Ferry Hagen, Teun Boekhout: Constructing Level-2 Phylogenetic Networks from Triplets. 450-462
Rune B. Lyngsø, Yun S. Song, Jotun Hein: Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony. 463-477



