Talks

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  David Penny: What can bioinformatics contribute to explain the origin of life? 1
• 
  Tobias Müller, Rainer Spang, Martin Vingron: A new method for modeling protein evolution. 2-8
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  Jan Cupal: Topology in Phenotype Space. 9-15
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  William R. Atchley: An Information Theoretic Analysis Of Correlation Among Amino Acid Sites In bHLH Protein Domains. 16
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  Knut Reinert, Jens Stoye, Torsten Will: Combining Divide-and-Conquer, the A^*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment. 17-24
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  Niels Grabe, Ralf Hofestädt: Predicting transcription factor binding sites by constructing context specific matrices. 25-36
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  Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Christian Lemmen, Alex J. Smola, Thomas Lengauer, Klaus-Robert Müller: Engineering Support Vector Machine Kerneis That Recognize Translation Initialion Sites. 37-43
• 
  Gene Myers: A Whole Genome Assembler for Drosophila. 44
• 
  Bastien Chevreux, Thomas Wetter, Sándor Suhai: Genome Sequence Assembly Using Trace Signals and Additional Sequence Information. 45-56
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  Akinori Sarai: Methods for Predicting Target Sites of Transcription Factors. 57-58
• 
  Normann Strack, Hans-Werner Mewes: SESAM: Seed Extraction Sequence Analysis Method. 59-65
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  Marc Rehmsmeier, Martin Vingron: Phylogeny meets sequence search. 66-72
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  Roman R. Stocsits, Ivo L. Hofacker, Peter F. Stadler: Conserved secondary structures in hepatitis B virus DNA. 73-79
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  Dietmar Schomburg: Functional Genomics - an integrated approach to the biosiences. 80
• 
  Oliver Kohlbacher, Hans-Peter Lenhof: Rapid Software Prototyping in Computational Molecular Biology. 81-92
• 
  Rolf Backofen, Sebastian Will, Peter Clote: Algorithmic approach to quantifying the hydrophobic force contribution in protein folding. 93-106
• 
  G. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler: An efficient potential for protein sequence design. 107-112
• 
  Klaus Prank, Georg Brabant: Quantitative approach to the analysis of complex hormonal signalling. 113-126
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  Daisuke Tominaga, Masahiro Okamoto, Yukihiro Maki, Shoji Watanabe, Yukihiro Eguchi: Nonlinear Numerical Optimization Technique Based on a Genetic Algorithm for Inverse Problems: Towards the Inference of Genetic Networks. 127-140
• 
  Robert Küffner, Ralf Zimmer, Thomas Lengauer: Pathway analysis in metabolic databases via differetial metabolic display (DMD). 141-147
• 
  Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender: E2F composite units in promoters of cell cycle genes. 148-154
• 
  Jacqueline Renée Reich: Onthological design patternsfor the integration of molecular biological information. 156-166
• 
  Guy Perrière, Laurent Duret: HOBACGEN: A database of homologous genes in bacteria. 167-173
• 
  Xin Chen, Andreas W. M. Dress, Holger Karas, Ingmar Reuter, Edgar Wingender: A database framework for mapping expression patterns. 174-178

Posters

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  Ole Bents, Hans-Werner Mewes: A generic system for the management of sequence annotations. 179-180
• 
  Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader: Clustering Protein Sequences ? Structure Prediction by Transitive Homology. 181
• 
  Xin Chen, Edgar Wingender: CYTOMER® : A database on gene expression sources. 182-183
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  Bastien Chevreux, Thomas Pfisterer, Thomas Wetter, Sándor Suhai: Assembly of Genomic Sequences Assisted by Automatic Finishing. 183-184
• 
  Peter Ernst, Karl-Heinz Glatting, Martin Senger, Sándor Suhai: W2H: a WWW Interface to Applications in Bioinformatics. 184-185
• 
  Matthias Fellenberg, Hans-Werner Mewes: Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic Pathways. 185-187
• 
  Markus Fischer, Tanja Schulz, Jürgen Pleiss, Rolf D. Schmid: Understanding the sequence-structure-function relationship of lipases. 188
• 
  Georg Fuellen, Johann-Wolfgang Wägele: Erosion Detection Yields More Plausible Phylogenetic Trees. 189
• 
  Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz: MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks. 190-194
• 
  David Gilbert, Juris Viksna: Pattern discovery methods for protein topology diagrams. 194-196
• 
  Christoph Gille, Andrean Goede, Kristian Rother, Robert Preissner, Cornelius Frömmel: Interfaces of Secondary Structural Elements in Proteins - Evolution of Atomic Substructures -. 196
• 
  Ruediger Goetz, Corinna Morys-Wortmann, Marcel Thürk: Drug Design Using an Iterative Computer Aided Process. 197
• 
  Korbinian Grote, Ralf Schneider, Thomas Werner: Kohonen maps are suitable for a biologically meaningful classification of transcription factor binding site matrices. 198-199
• 
  Reinhard Guthke, Wolfgang Schmidt-Heck, Peter Müller, Heike Rodig, Ralph Berkholz: Data and knowlage based experimental design for bioprocess optimization. 199-200
• 
  Karsten Hokamp, Kenneth H. Wolfe: What's new in the library? What's new in GenBank? Let PubCrawler tell you! 200-201
• 
  Dirk Holste, Dieter Beule, Wolfram Liebermeister, Johannes Schuchhardt, Hanspeter Herzel: Mutual Information Analysis of Surrogate Gene Expression Data. 201-204
• 
  Carl-Christian Kanne, Falk Schreiber, Dietrich Trümbach: Interactive Biochemical Pathways. 204-205
• 
  Gabi Kastenmüller, Hans-Werner Mewes: An Object-Oriented Data Model for the Dynamic Modelling of Metabolic Pathways. 206-207
• 
  Ina Koch, Stefan Schuster, Monika Heiner: Simulation and analysis of metabolic networks by time-dependent Petri nets. 208-209
• 
  Oliver Leven, Dietmar Schomburg: Prediction of Protein Thermostability. 210
• 
  Ines Liebich, Jürgen Bode, Edgar Wingender: S/MARt DB: A database on chromatin organizing S/MAR regions. 210-212
• 
  T. Meinhardt, M. Prüß, Edgar Wingender: PathoDB - a database that combines pathological data with molecular information. 212-213
• 
  Michael Meyer, Thomas Steinke, Jürgen Sühnel, Maria Brandl: Density functional study of guanine quartet structures. 213-215
• 
  Michael Meyer, Wolfram Trowitzsch-Kienast: Active analog modelling of novel siderophores. 215-216
• 
  Steffen Möller, Michael J. Wise, David P. Kreil, Michael Schroeder, D. Gilbest, Rolf Apweiler: Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT. 216-218
• 
  Arne Müller, Robert M. MacCallum, Michael J. E. Sternberg: Genome annotation with PSI-BLAST: Benchmark and application. 218-220
• 
  Steffen Neumann, Stefan Posch, Gerhard Sagerer: Towards Evaluation of Docking Hypotheses using elastic Matching. 220-221
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  Thomas Pfeiffer, Juan Carlos Nuño, Francisco Montero, Stefan Schuster: Analyzing Large enzymatic reaction networks. 221-223
• 
  Frank Schacherer, Edgar Wingender: The Transpath Signal Transduction Database. 223-225
• 
  Alexander Schliep: Learning Hidden Markov Model Topology. 225-226
• 
  Dietmar Schomburg, Ida Schomburg, Antje Chang, C. Bänsch: BRENDA the Information System for Enzymes and metabolic Information. 226-227
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  Jacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak: Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database. 227-229
• 
  Arno Velds, Henning Hermjakob, Rolf Apweiler: Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. 229-230
• 
  Paolo Zaccaria, Hans-Werner Mewes: Homology based gene prediction in Arabidopsis thaliana. 230-231
• 
  Olav Zimmermann, Peter Krämer, Dietmar Schomburg: Pre- and Postfiltering in Protein Docking. 231-232
• 
  Peter Ernst, Mechthild Falkenhahn, Karl-Heinz Glatting, Agnes Hotz-Wagenblatt, Clemens Suter-Crazzolara, Sándor Suhai: The Biocomputing Service Group at the DKFZ. 232-233
• 
  K.-P. Pleissner, W. Michalek, A. Graner: Genome Analysis in Barley: Consttuction of EST Databases. 233-234

last updated on Thu May 23 03:18:43 2013 by the dblp team
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