GCB 1999:
Hannover,
Germany
Proceedings of the German Conference on Bioinformatics,
GCB '99,
October 4-6,
1999,
Hannover,
Germany
Talks
- David Penny:
What can bioinformatics contribute to explain the origin of life?
1
- Tobias Müller, Rainer Spang, Martin Vingron:
A new method for modeling protein evolution.
2-8
- Jan Cupal:
Topology in Phenotype Space.
9-15
- William R. Atchley:
An Information Theoretic Analysis Of Correlation Among Amino Acid Sites In bHLH Protein Domains.
16
- Knut Reinert, Jens Stoye, Torsten Will:
Combining Divide-and-Conquer, the A*-Algorithm, and Successive Realignment Approaches to Speed Multiple Sequence Alignment.
17-24
- Niels Grabe, Ralf Hofestädt:
Predicting transcription factor binding sites by constructing context specific matrices.
25-36
- Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Christian Lemmen, Alex J. Smola, Thomas Lengauer, Klaus-Robert Müller:
Engineering Support Vector Machine Kerneis That Recognize Translation Initialion Sites.
37-43
- Gene Myers:
A Whole Genome Assembler for Drosophila.
44
- Bastien Chevreux, Thomas Wetter, Sándor Suhai:
Genome Sequence Assembly Using Trace Signals and Additional Sequence Information.
45-56
- Akinori Sarai:
Methods for Predicting Target Sites of Transcription Factors.
57-58
- Normann Strack, Hans-Werner Mewes:
SESAM: Seed Extraction Sequence Analysis Method.
59-65
- Marc Rehmsmeier, Martin Vingron:
Phylogeny meets sequence search.
66-72
- Roman R. Stocsits, Ivo L. Hofacker, Peter F. Stadler:
Conserved secondary structures in hepatitis B virus DNA.
73-79
- Dietmar Schomburg:
Functional Genomics - an integrated approach to the biosiences.
80
- Oliver Kohlbacher, Hans-Peter Lenhof:
Rapid Software Prototyping in Computational Molecular Biology.
81-92
- Rolf Backofen, Sebastian Will, Peter Clote:
Algorithmic approach to quantifying the hydrophobic force contribution in protein folding.
93-106
- G. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler:
An efficient potential for protein sequence design.
107-112
- Klaus Prank, Georg Brabant:
Quantitative approach to the analysis of complex hormonal signalling.
113-126
- Daisuke Tominaga, Masahiro Okamoto, Yukihiro Maki, Shoji Watanabe, Yukihiro Eguchi:
Nonlinear Numerical Optimization Technique Based on a Genetic Algorithm for Inverse Problems: Towards the Inference of Genetic Networks.
127-140
- Robert Küffner, Ralf Zimmer, Thomas Lengauer:
Pathway analysis in metabolic databases via differetial metabolic display (DMD).
141-147
- Alexander E. Kel, Olga V. Kel-Margoulis, Edgar Wingender:
E2F composite units in promoters of cell cycle genes.
148-154
- Jacqueline Renée Reich:
Onthological design patternsfor the integration of molecular biological information.
156-166
- Guy Perrière, Laurent Duret:
HOBACGEN: A database of homologous genes in bacteria.
167-173
- Xin Chen, Andreas W. M. Dress, Holger Karas, Ingmar Reuter, Edgar Wingender:
A database framework for mapping expression patterns.
174-178
Posters
- Ole Bents, Hans-Werner Mewes:
A generic system for the management of sequence annotations.
179-180
- Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader:
Clustering Protein Sequences ? Structure Prediction by Transitive Homology.
181
- Xin Chen, Edgar Wingender:
CYTOMER® : A database on gene expression sources.
182-183
- Bastien Chevreux, Thomas Pfisterer, Thomas Wetter, Sándor Suhai:
Assembly of Genomic Sequences Assisted by Automatic Finishing.
183-184
- Peter Ernst, Karl-Heinz Glatting, Martin Senger, Sándor Suhai:
W2H: a WWW Interface to Applications in Bioinformatics.
184-185
- Matthias Fellenberg, Hans-Werner Mewes:
Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic Pathways.
185-187
- Markus Fischer, Tanja Schulz, Jürgen Pleiss, Rolf D. Schmid:
Understanding the sequence-structure-function relationship of lipases.
188
- Georg Fuellen, Johann-Wolfgang Wägele:
Erosion Detection Yields More Plausible Phylogenetic Trees.
189
- Andreas Freier, Ralf Hofestädt, Matthias Lange, Uwe Scholz:
MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks.
190-194
- David Gilbert, Juris Viksna:
Pattern discovery methods for protein topology diagrams.
194-196
- Christoph Gille, Andrean Goede, Kristian Rother, Robert Preissner, Cornelius Frömmel:
Interfaces of Secondary Structural Elements in Proteins - Evolution of Atomic Substructures -.
196
- Ruediger Goetz, Corinna Morys-Wortmann, Marcel Thürk:
Drug Design Using an Iterative Computer Aided Process.
197
- Korbinian Grote, Ralf Schneider, Thomas Werner:
Kohonen maps are suitable for a biologically meaningful classification of transcription factor binding site matrices.
198-199
- Reinhard Guthke, Wolfgang Schmidt-Heck, Peter Müller, Heike Rodig, Ralph Berkholz:
Data and knowlage based experimental design for bioprocess optimization.
199-200
- Karsten Hokamp, Kenneth H. Wolfe:
What's new in the library? What's new in GenBank? Let PubCrawler tell you!
200-201
- Dirk Holste, Dieter Beule, Wolfram Liebermeister, Johannes Schuchhardt, Hanspeter Herzel:
Mutual Information Analysis of Surrogate Gene Expression Data.
201-204
- Carl-Christian Kanne, Falk Schreiber, Dietrich Trümbach:
Interactive Biochemical Pathways.
204-205
- Gabi Kastenmüller, Hans-Werner Mewes:
An Object-Oriented Data Model for the Dynamic Modelling of Metabolic Pathways.
206-207
- Ina Koch, Stefan Schuster, Monika Heiner:
Simulation and analysis of metabolic networks by time-dependent Petri nets.
208-209
- Oliver Leven, Dietmar Schomburg:
Prediction of Protein Thermostability.
210
- Ines Liebich, Jürgen Bode, Edgar Wingender:
S/MARt DB: A database on chromatin organizing S/MAR regions.
210-212
- T. Meinhardt, M. Prüß, Edgar Wingender:
PathoDB - a database that combines pathological data with molecular information.
212-213
- Michael Meyer, Thomas Steinke, Jürgen Sühnel, Maria Brandl:
Density functional study of guanine quartet structures.
213-215
- Michael Meyer, Wolfram Trowitzsch-Kienast:
Active analog modelling of novel siderophores.
215-216
- Steffen Möller, Michael J. Wise, David P. Kreil, Michael Schroeder, D. Gilbest, Rolf Apweiler:
Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT.
216-218
- Arne Müller, Robert M. MacCallum, Michael J. E. Sternberg:
Genome annotation with PSI-BLAST: Benchmark and application.
218-220
- Steffen Neumann, Stefan Posch, Gerhard Sagerer:
Towards Evaluation of Docking Hypotheses using elastic Matching.
220-221
- Thomas Pfeiffer, Juan Carlos Nuño, Francisco Montero, Stefan Schuster:
Analyzing Large enzymatic reaction networks.
221-223
- Frank Schacherer, Edgar Wingender:
The Transpath Signal Transduction Database.
223-225
- Alexander Schliep:
Learning Hidden Markov Model Topology.
225-226
- Dietmar Schomburg, Ida Schomburg, Antje Chang, C. Bänsch:
BRENDA the Information System for Enzymes and metabolic Information.
226-227
- Jacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak:
Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway Database.
227-229
- Arno Velds, Henning Hermjakob, Rolf Apweiler:
Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation.
229-230
- Paolo Zaccaria, Hans-Werner Mewes:
Homology based gene prediction in Arabidopsis thaliana.
230-231
- Olav Zimmermann, Peter Krämer, Dietmar Schomburg:
Pre- and Postfiltering in Protein Docking.
231-232
- Peter Ernst, Mechthild Falkenhahn, Karl-Heinz Glatting, Agnes Hotz-Wagenblatt, Clemens Suter-Crazzolara, Sándor Suhai:
The Biocomputing Service Group at the DKFZ.
232-233
- K.-P. Pleissner, W. Michalek, A. Graner:
Genome Analysis in Barley: Consttuction of EST Databases.
233-234
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