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ORCIDBIOCOMP 2007: Las Vegas, Nevada, USA
- Hamid R. Arabnia, Mary Qu Yang, Jack Y. Yang:
International Conference on Bioinformatics & Computational Biology, BIOCOMP 2007, Volume II, June 25-28, 2007, Las Vegas Nevada, USA. CSREA Press 2007, ISBN 1-60132-041-8
Bioinformatics and Medical Informatics Software Tools
- Kerstin Denecke, Jochen Bernauer:
Extracting Specific Medical Data Across Multiple Languages. BIOCOMP 2007: 309-315 - Carol Lushbough, Michael K. Bergman, Carolyn J. Lawrence, Douglas M. Jennewein, Volker Brendel:
Creating Bioinformatic Workflows within the BioExtract Server. BIOCOMP 2007: 316-322 - Bernhard Pfeifer, Johannes Aschaber, Christian Baumgartner, Stephan Dreiseitl, Robert Modre, Günter Schreier, Bernhard Tilg:
A data warehouse for prostate cancer biomarker discovery. BIOCOMP 2007: 323-327 - Guna Sekaran Gurusamy, Tapas Kumar Basak, P. T. Kalaichelvan:
Bio Informatics for Disease Associated with Bone Marrow Depression. BIOCOMP 2007: 328-333 - Zhiming Wang, Xin Gao, Congzhou He, John A. Miller, Jessica C. Kissinger, Mark Heiges, Cristina Aurrecoechea, Eileen T. Kraemer, Cary Pennington:
A Comparison of Federated Databases with Web Services for the Integration of Bioinformatics Data. BIOCOMP 2007: 334-338 - Mehrdad Sharbaf:
Biometric Authentication: A Pragmatic Model to Measure Effectiveness of Biometric System in Information Systems Security. BIOCOMP 2007: 339-344
Prediction of Structure and Dynamics of Macro Molecules
- Mohammad Al Bataineh, Maria Alonso, Guillermo E. Atkin, Siyun Wang, Wei Zhang:
An Optimized Ribosome Binding Model Using Communication Theory Concepts. BIOCOMP 2007: 345-348 - Junilda Spirollari, Jason T. L. Wang, Yongkyu Park:
A New Algorithm for RNA Secondary Structure Prediction. BIOCOMP 2007: 349-354 - Saad Osman Abdalla Subair, Safaai Deris:
Blind Test Is A Pragmatic Test for A New Protein Secondary Structure Classifier. BIOCOMP 2007: 355-361 - Arvind Gupta, Mehdi Karimi, Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey:
Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism Lattice Under HP Model. BIOCOMP 2007: 362-369 - Paul D. Yoo, Bing Bing Zhou, Albert Y. Zomaya:
Machine Intelligence in Protein Sequence Analysis and Structure Prediction. BIOCOMP 2007: 370-377 - Aleksandar Poleksic, Joseph F. Danzer:
Protein side-chain modeling using a combination of knowledge and energy based approaches. BIOCOMP 2007: 378-382 - Jing Zhang, Maozu Guo, Yang Yu:
Methods and Simulations for the Protein Folding. BIOCOMP 2007: 383-386 - Jing Zhang, Maozu Guo, Yang Yu:
Simulations of Protein Folding Process. BIOCOMP 2007: 387-391 - Chandrasekhar Mamidipally, Santosh B. Noronha, Sumantra Dutta Roy:
A Novel Method for Feature Identification of Proteins. BIOCOMP 2007: 392-399 - Navita Srivastava, Arti Saxena, Rajeev Prithiani:
Neural Networks for Predicting Structural Classification of Protein from Primary Structure. BIOCOMP 2007: 400-406 - Oyun-Erdene Namsrai, Kwang Su Jung, Sunshin Kim, Keun Ho Ryu:
Characterizing Pseudobase and Predicting RNA Secondary Structure with Simple H-Type Pseudoknots Based on Energy Model. BIOCOMP 2007: 407-410 - Xiongwu Wu, Bernard R. Brooks:
Modeling Of Macromolecular Assemblies with Map Objects. BIOCOMP 2007: 411-420
Metablomics, Proteomic and Protein Function Prediction
- Liangjiang Wang:
A Semi-Supervised Learning Approach for Prediction of DNA-Binding Residues in Protein Sequences. BIOCOMP 2007: 421-426 - Jianwen Fang, Nazila Salamat-Miller, Yinghua Dong, C. Russell Middaugh:
Prediction of Polyanion Binding Potential in Proteins Using Random Forest. BIOCOMP 2007: 427-431 - Jack Horner:
Primary-Structure/Qseltamivir-Inhibition Correlations in Influenza-H5N1-Related Neuraminidases. BIOCOMP 2007: 432-438 - Aleksey A. Porollo, Baoqiang Cao, Jaroslaw Meller:
Biases in Lipid Accessibility Prediction Can Be Used for the Recognition of Protein Interaction Interfaces in Soluble Proteins. BIOCOMP 2007: 439-445 - Kazim Ali, Abad Ali Shah, Arshad Ali, Hafiz Farooq Ahmad:
A Bernoulli Process Approximation for the Reverse Translation of Protein to DNA/mRNA. BIOCOMP 2007: 446-451 - Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov:
Analysis of Protein Functional Site Distribution on Gene Structure. BIOCOMP 2007: 452-455 - Zhong-Hui Duan, Dianne Perez, Ting Shi:
Understanding the relationship between human protein sequences and their biological functions. BIOCOMP 2007: 456-462 - Prashanth Suravajhala, Tarun Gupta, Arun Gupta, Renuka Suravajhala, Shirish Siddamshetty:
Identifying the Function of Hypothetical Proteins: A Bioinformatical Approach. BIOCOMP 2007: 463-470
Algorithms and Models + Intelligent Drug Design
- A. Keith Dunker:
Protein Intrinsic Disorder, Cell Signaling, Drug Discovery, and Alternative Splicing. BIOCOMP 2007: 471-472 - Richard Samade, Boris Kogan:
Calcium Alternans in Cardiac Cell Mathematical Models. BIOCOMP 2007: 473-479 - Mila E. Majster-Cederbaum, Nils Semmelrock, Verena Wolf:
Interaction Models for Biochemical Reactions. BIOCOMP 2007: 480-486 - Alexei Skvortsov, Russell Connell, Peter Dawson, Ralph Gailis:
Epidemic Spread Modeling: Alignment of Agent-Based Simulation with a Simple Mathematical Model. BIOCOMP 2007: 487-490 - Chang Wook Kim, Zia Mohy-Ud-Din, Sang Hyo Woo, J. H. Lee, Hee Joon Park, I. Y. Park, Myoung Nam Kim, Chul-Ho Won, Jin-Ho Cho:
Automatic Detection Algorithm for Residual Quantity of Ringer's Solution. BIOCOMP 2007: 491-496 - Kishore R. Sakharkar, Meena K. Sakharkar:
Searching for Drug Targets in Salmonella Genomes. BIOCOMP 2007: 497-503 - Bhagwan D. Aggarwala:
On an ODE Model for Development to AIDS. BIOCOMP 2007: 504-509 - Gregory Vert, Radhika Radhakrishnan:
A Logical Data Model for Genome Data. BIOCOMP 2007: 510-514 - Jack Y. Yang, Guo-Zheng Li, Li-Xin Liu, Mary Qu Yang:
Classification of Brain Glioma by Using Neural Networks Ensemble with Multi-Task Learning. BIOCOMP 2007: 515-522
System Modeling and Genome Analysis
- Tian Xia, Jie Li, Eve Syrkin Wurtele, Xun Gu:
A tool for comprehensive analysis of protein interaction networks. BIOCOMP 2007: 523-527 - Jennifer L. Neary, Anthony Montanez, Timothy G. Lilburn, Yufeng Wang:
Metabolic pathway complements of Five Francisella strains. BIOCOMP 2007: 528-532 - Travis J. Hestilow, James Perez, Yufei Huang:
Clustering Of Gene Expression Data Based On Shape Similarity. BIOCOMP 2007: 533-539 - Jianying Gu, Jennifer L. Neary, Audrey Moshfeghian, Hong Cai, Sos S. Agaian, Timothy G. Lilburn, Yufeng Wang:
Lineage Specific Expansion in Vibrio Species. BIOCOMP 2007: 540-544 - Padmanabhan Mahadevan, Donald Seto:
Comparative genomics using CoreGenes to analyze small bacterial genomes, with an application for the annotation of hypothetical proteins. BIOCOMP 2007: 545-552
Keynote Lecture
- Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker:
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP 2007: 553-566
Genomics I
- Xuehui Li, Tamer Kahveci:
Quality-Based Similarity Search for Biological Sequence Databases. BIOCOMP 2007: 567-573 - Ping Deng, My T. Thai, Weili Wu:
A Non-Unique Probes Selection Algorithm Using d-Disjunct Matrix. BIOCOMP 2007: 574-579 - Onur Seref, Claudio Cifarelli, O. Erhun Kundakcioglu, Panos M. Pardalos, Mingzhou Ding:
Detecting Categorical Discrimination in a Visuomotor Task Using Selective Support Vector Machines. BIOCOMP 2007: 580-590
Genomics II
- Jianyong Dai, Jianlin Cheng:
HHMMVE: A Visual Editor for Profile Hidden Markov Model. BIOCOMP 2007: 591-597 - Yiming Zhou, John Ferguson, Joseph T. Chang, Yuval Kluger:
Inter- and Intra-Combinatorial Regulation by Transcriptions Factors and MicroRNAs. BIOCOMP 2007: 598-604 - Minghui Jiang, James Anderson, Joel Gillespie, Martin Mayne:
uShuffle: a Useful Tool for Shuffling Biological Sequences While Preserving the K-let Counts. BIOCOMP 2007: 605-613 - Xiaoming Liu, Yun-Xin Fu:
Estimating The Lower Bounds Of Recombination With Or Without Recurrent Mutations. BIOCOMP 2007: 614-620 - Mitrick Johns:
Compressed Synteny Plots: a Tool for Visualizing Repeated Genomic Sequences. BIOCOMP 2007: 621-630
Genomics III
- Wei Li, Jason S. Carroll, Myles Brown, Xiaole Shirley Liu:
xMAN: extreme MApping of oligoNucleotides. BIOCOMP 2007: 631-637 - Jing Wu:
Improving the Specificity of Exon Prediction Using Genomic Homology. BIOCOMP 2007: 638-642 - Xin Yan, Tian Zheng:
Discriminant Analysis Using Multigene Expression Profiles in Classification of Breast Cancer. BIOCOMP 2007: 643-649 - Chieh-Chun Chen, Xinguang Zhu, Sheng Zhong:
Selection of Thermodynamic Models for Combinatorial Control of Multiple Transcription Factors in Early Differentiation of Embryonic Stem Cells. BIOCOMP 2007: 650-656 - Guohua Wang, Xin Wang, Lang Li, Kenneth P. Nephew, Howard J. Edenberg, Feng Zhou, Yunlong Liu:
Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression Data. BIOCOMP 2007: 657-663 - Xin Wang, Guohua Wang, Changyu Shen, Lang Li, Xinguo Wang, Sean D. Mooney, Howard J. Edenberg, Jeremy Sanford, Yunlong Liu:
Refining Detection of RNA-Protein Binding Regions by Pyrosequencing of RNA Fragments. BIOCOMP 2007: 664-672
Genomics IV
- Bhanu Vanteru, Jahangheer S. Shaik, Mohammed Yeasin:
Semantically Linking PubMed to the Gene Ontology for Ontology-based Browsing. BIOCOMP 2007: 673-678 - Vinhthuy T. Phan, Allen Thomas, Carrie Hayes Sutter:
Stability of RNA Structural Motifs and its Influence on Editing Efficiency by ADARS. BIOCOMP 2007: 679-685 - Jian Wu, Nataliya Lenchik, Ivan Gerling:
Microarray Data Analysis and Mining Strategy to Reduce Type 1 and Type 2 Errors. BIOCOMP 2007: 686-692 - Min Xu, Ming-Chih J. Kao, Juan Nunez-Iglesias, Joseph Nevins, Mike West, Xianghong Jasmine Zhou:
Characterizing Disease-specific Pathways and Their Coordination by Integrative Microarray Analysis with Application to Cancer. BIOCOMP 2007: 693-699 - Mengxia Zhu, Qishi Wu:
A Parallel Computing Approach to Decipher Transcription Network for Large-scale Microarray Datasets. BIOCOMP 2007: 700-706 - Yunfeng Yang, Daniel Harris, Feng Luo, Liyou Wu, Andrea Parsons, Anthony Palumbo, Jizhong Zhou:
Physiological and Transcriptomic Analyses to Characterize the Function of Fur and Iron Response in Shewanella Oneidensis. BIOCOMP 2007: 707-713 - Eunseog Youn:
Improving a Protein Structure Similarity Measure Using Inter-Residue Distance Matrices. BIOCOMP 2007: 714-720
Late Papers
- Debebe Asefa, Dinesh P. Mital, Syed Haque, Shankar Srinivasan:
Activation Points Extraction and Noise Removal of fMRI Signal Using Novel Local Cosine Technique. BIOCOMP 2007: 721-726 - Dharmendra Kumar, Yashoda Mittal:
Analysis of the Database of Cystic Fibrosis for Ascertaining Test Systems. BIOCOMP 2007: 727-730 - Feng Yue, Jijun Tang:
Three Sequence Alignment and Ancestor Inference with Affine Gap Costs. BIOCOMP 2007: 731-737 - Hyunjung Shin, Andreas Martin Lisewski, Olivier Lichtarge:
Graph-Based Protein Functional Classification. BIOCOMP 2007: 738-744 - Guy Lingani, Zengjian Hu, Legand L. Burge III, William M. Southerland:
Enhancing Biomedical Knowledge through Computational Methods: Howard University Center for Computational Biology and Bioinformatics. BIOCOMP 2007: 745-747 - M. Reza Mashinchi, M. Hadi Mashinchi, Ali Selamat:
New Approach for Language Identification Based on DNA Computing. BIOCOMP 2007: 748-752 - Efthimios Motakis, Anna V. Ivshina, Vladimir A. Kuznetsov:
Identification of Essential Genes and Gene Pairs Associated with Survival Time of Cancer Patients. BIOCOMP 2007: 753-759 - Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov:
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes. BIOCOMP 2007: 760-766 - Yufang Jin:
Stability Analysis of Genetic Regulatory Network with Additive Noises. BIOCOMP 2007: 767-773 - Nahed Solouma:
A Novel Algorithm to Reduce the Size and Processing Time of Nucleotide Sequences. BIOCOMP 2007: 774-780 - Chen Feng, Catherine Putonti, Michael Quance, Stephen Huff, Andrey Belokrylov, S. Lennart Johnsson, Krishna Jayaraman, Michael Hogan, Yuriy Fofanov:
Developing Assays for the Detection of Influenza in Human Samples. BIOCOMP 2007: 781-
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