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Publication search results
found 87 matches
- 2020
- Meng Liang, Junlan Nie
:
Prediction of Enzyme Function Based on a Structure Relation Network. IEEE Access 8: 132360-132366 (2020) - Liming Qiu, Xiaoqin Zou:
Scoring functions for protein-RNA complex structure prediction: advances, applications, and future directions. Commun. Inf. Syst. 20(1): 1-22 (2020) - Xingqian Chen
, Shuangbao Song
, Junkai Ji, Zheng Tang, Yuki Todo:
Incorporating a multiobjective knowledge-based energy function into differential evolution for protein structure prediction. Inf. Sci. 540: 69-88 (2020) - Titas De:
Introducing Anisotropic Minkowski Functionals for Local Structure Analysis and Prediction of Biomechanical Strength of Proximal Femur Specimens. CoRR abs/2004.01029 (2020) - Nicolas Swenson, Aditi S. Krishnapriyan, Aydin Buluç, Dmitriy Morozov, Katherine A. Yelick:
PersGNN: Applying Topological Data Analysis and Geometric Deep Learning to Structure-Based Protein Function Prediction. CoRR abs/2010.16027 (2020) - 2019
- Chao Wang, Yi Wei, Haicang Zhang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu:
Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling. BMC Bioinform. 20-S(3): 99-108 (2019) - Wei Zheng
, Chengxin Zhang, Eric W. Bell
, Yang Zhang
:
I-TASSER gateway: A protein structure and function prediction server powered by XSEDE. Future Gener. Comput. Syst. 99: 73-85 (2019) - Xinxiang Wang, Sheng-You Huang
:
Integrating Bonded and Nonbonded Potentials in the Knowledge-Based Scoring Function for Protein Structure Prediction. J. Chem. Inf. Model. 59(6): 3080-3090 (2019) - Amaninder Singh Gill, Joshua D. Summers, Chiradeep Sen:
Impact of Chaining Method and Level of Completion on Accuracy of Function Structure-Based Market Price Prediction Models. J. Comput. Inf. Sci. Eng. 19(4) (2019) - 2018
- Shuangbao Song
, Junkai Ji
, Xingqian Chen
, Shangce Gao
, Zheng Tang, Yuki Todo:
Adoption of an improved PSO to explore a compound multi-objective energy function in protein structure prediction. Appl. Soft Comput. 72: 539-551 (2018) - Noor AlHuda Ali A. H. Saeed, Israa Hussein Hamzah, Alaa Naseer Mohammed Ali, Abdulwahab Ali Abuderman:
Prediction of single nucleotide polymorphisms (SNPs) in apolipoprotein E gene and their possible associations with a deleterious effect on the structure and functional properties: an in silico approach. Netw. Model. Anal. Health Informatics Bioinform. 7(1): 16 (2018) - Christian Klos
, Daniel Miner, Jochen Triesch
:
Bridging structure and function: A model of sequence learning and prediction in primary visual cortex. PLoS Comput. Biol. 14(6) (2018) - 2017
- Amaninder Singh Gill, Joshua D. Summers, Cameron J. Turner:
Comparing function structures and pruned function structures for market price prediction: An approach to benchmarking representation inferencing value. Artif. Intell. Eng. Des. Anal. Manuf. 31(4): 550-566 (2017) - Chengxin Zhang, Peter L. Freddolino, Yang Zhang:
COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information. Nucleic Acids Res. 45(Webserver-Issue): W291-W299 (2017) - Gregorio Kappaun Rocha, Jaqueline S. Angelo, Karina B. Santos
, Fábio L. Custódio, Laurent Emmanuel Dardenne, Helio J. C. Barbosa:
Using an aggregation tree to arrange energy function terms for protein structure prediction. CIBCB 2017: 1-7 - Sandhya Parasnath Dubey, N. Gopalakrishna Kini
, S. Balaji
, M. Sathish Kumar:
Protein structure prediction on 2D square HP lattice with revised fitness function. ICACCI 2017: 1732-1736 - Or Litany, Tal Remez, Emanuele Rodolà
, Alexander M. Bronstein, Michael M. Bronstein:
Deep Functional Maps: Structured Prediction for Dense Shape Correspondence. ICCV 2017: 5660-5668 - Alessio Martino
, Enrico Maiorino, Alessandro Giuliani
, Mauro Giampieri, Antonello Rizzi
:
Supervised Approaches for Function Prediction of Proteins Contact Networks from Topological Structure Information. SCIA (1) 2017: 285-296 - Or Litany, Tal Remez, Emanuele Rodolà, Alexander M. Bronstein, Michael M. Bronstein:
Deep Functional Maps: Structured Prediction for Dense Shape Correspondence. CoRR abs/1704.08686 (2017) - 2016
- Alvin Farrel, Jonathan Murphy, Jun-tao Guo:
Structure-based prediction of transcription factor binding specificity using an integrative energy function. Bioinform. 32(12): 306-313 (2016) - Md. Tamjidul Hoque, Yuedong Yang
, Avdesh Mishra, Yaoqi Zhou
:
sDFIRE: Sequence-specific statistical energy function for protein structure prediction by decoy selections. J. Comput. Chem. 37(12): 1119-1124 (2016) - R. Shamima, S. Suresh:
Prediction of membrane protein structures using a Projection based Meta-cognitive Radial Basis Function Network. IJCNN 2016: 1229-1235 - Ivan Escobar, Nicolas Hidalgo
, Mario Inostroza-Ponta
, Mauricio Marín, Erika Rosas, Márcio Dorn
:
Evaluation of a combined energy fitness function for a distributed memetic algorithm to tackle the 3D protein structure prediction problem. SCCC 2016: 1-10 - 2015
- Albert J. Kooistra
, Rob Leurs, Iwan J. P. de Esch, Chris de Graaf
:
Structure-Based Prediction of G-Protein-Coupled Receptor Ligand Function: A β-Adrenoceptor Case Study. J. Chem. Inf. Model. 55(5): 1045-1061 (2015) - Jianyi Yang
, Yang Zhang:
I-TASSER server: new development for protein structure and function predictions. Nucleic Acids Res. 43(Webserver-Issue): W174-W181 (2015) - Navid Nourani-Vatani, Roberto Javier López-Sastre, Stefan B. Williams
:
Structured Output Prediction with Hierarchical Loss Functions for Seafloor Imagery Taxonomic Categorization. IbPRIA 2015: 173-183 - Hossein Hajimirsadeghi, Greg Mori:
Learning Ensembles of Potential Functions for Structured Prediction with Latent Variables. ICCV 2015: 4059-4067 - 2014
- Yuxiang Jiang, Wyatt T. Clark, Iddo Friedberg
, Predrag Radivojac:
The impact of incomplete knowledge on the evaluation of protein function prediction: a structured-output learning perspective. Bioinform. 30(17): 609-616 (2014) - Anshuman Dixit, Gennady Verkhivker
:
Structure-Functional Prediction and Analysis of Cancer Mutation Effects in Protein Kinases. Comput. Math. Methods Medicine 2014: 653487:1-653487:24 (2014) - Huda Amin Maghawry
, Mostafa G. M. Mostafa, Tarek F. Gharib:
A New Protein Structure Representation for Efficient Protein Function Prediction. J. Comput. Biol. 21(12): 936-946 (2014)
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