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Publication search results
found 1,182 matches
- 2024
- Shayesteh Arasti
, Puoya Tabaghi
, Yasamin Tabatabaee
, Siavash Mirarab
:
Optimal Tree Metric Matching Enables Phylogenomic Branch Length Estimation. RECOMB 2024: 462-465 - George I. Austin
, Aya Brown Kav
, Heekuk Park
, Jana Biermann
, Anne-Catrin Uhlemann
, Tal Korem
:
Processing-Bias Correction with DEBIAS-M Improves Cross-Study Generalization of Microbiome-Based Prediction Models. RECOMB 2024: 425-428 - Ali Azizpour, Advait Balaji, Todd J. Treangen, Santiago Segarra:
GraSSRep: Graph-Based Self-supervised Learning for Repeat Detection in Metagenomic Assembly. RECOMB 2024: 372-376 - Haiyang Bian, Yixin Chen, Xiaomin Dong, Chen Li, Minsheng Hao, Sijie Chen, Jinyi Hu, Maosong Sun, Lei Wei, Xuegong Zhang:
scMulan: A Multitask Generative Pre-Trained Language Model for Single-Cell Analysis. RECOMB 2024: 479-482 - Myson C. Burch, Aritra Bose, Gregory Dexter, Laxmi Parida, Petros Drineas:
MaSk-LMM: A Matrix Sketching Framework for Linear Mixed Models in Association Studies. RECOMB 2024: 352-355 - Ghanshyam Chandra, Daniel Gibney, Chirag Jain:
Haplotype-Aware Sequence Alignment to Pangenome Graphs. RECOMB 2024: 381-384 - Uthsav Chitra, Brian J. Arnold, Hirak Sarkar, Cong Ma, Sereno Lopez-Darwin, Kohei Sanno, Benjamin J. Raphael:
Mapping the Topography of Spatial Gene Expression with Interpretable Deep Learning. RECOMB 2024: 368-371 - Kapil Devkota
, Anselm Blumer
, Xiaozhe Hu
, Lenore Cowen
:
Fast Approximate IsoRank for Scalable Global Alignment of Biological Networks. RECOMB 2024: 1-16 - Yuxuan Du
, Wenxuan Zuo, Fengzhu Sun:
ImputeCC Enhances Integrative Hi-C-Based Metagenomic Binning Through Constrained Random-Walk-Based Imputation. RECOMB 2024: 99-114 - C. S. Elder
, Minh Hoang
, Mohsen Ferdosi, Carl Kingsford
:
A Scalable Optimization Algorithm for Solving the Beltway and Turnpike Problems with Uncertain Measurements. RECOMB 2024: 201-216 - Yimin Fan, Yu Li, Jun Ding, Yue Li:
GFETM: Genome Foundation-Based Embedded Topic Model for scATAC-seq Modeling. RECOMB 2024: 314-319 - Jack Freestone, Lukas Käll
, William Stafford Noble
, Uri Keich
:
Semi-supervised Learning While Controlling the FDR with an Application to Tandem Mass Spectrometry Analysis. RECOMB 2024: 448-453 - Boyang Fu, Prateek Anand, Aakarsh Anand, Joel Mefford, Sriram Sankararaman:
A Scalable Adaptive Quadratic Kernel Method for Interpretable Epistasis Analysis in Complex Traits. RECOMB 2024: 458-461 - Askar Gafurov, Tomás Vinar, Paul Medvedev, Brona Brejová:
Efficient Analysis of Annotation Colocalization Accounting for Genomic Contexts. RECOMB 2024: 38-53 - Madalina Giurgiu
, Nadine Wittstruck, Elias Rodriguez-Fos, Rocío Chamorro González, Lotte Brückner, Annabell Krienelke-Szymansky, Konstantin Helmsauer, Anne Hartebrodt
, Philipp Euskirchen
, Richard P. Koche
, Kerstin Haase
, Knut Reinert
, Anton G. Henssen
:
Decoil: Reconstructing Extrachromosomal DNA Structural Heterogeneity from Long-Read Sequencing Data. RECOMB 2024: 406-411 - Meir Goldenberg, Loay Mualem, Amit Shahar, Sagi Snir, Adi Akavia:
Privacy Preserving Epigenetic PaceMaker: Stronger Privacy and Improved Efficiency. RECOMB 2024: 412-416 - Ludwig Gräf, Daniel Sens, Liubov Shilova, Francesco Paolo Casale:
Disease Risk Predictions with Differentiable Mendelian Randomization. RECOMB 2024: 385-389 - Yichen Gu, Jialin Liu, Chen Li, Joshua D. Welch:
Mapping Cell Fate Transition in Space and Time. RECOMB 2024: 417-420 - Nathan Guerin, Henry Childs, Pei Zhou, Bruce Randall Donald:
DexDesign: A New OSPREY-Based Algorithm for Designing de novo D-peptide Inhibitors. RECOMB 2024: 336-339 - Peter Halmos, Xinhao Liu, Julian Gold, Feng Chen, Li Ding, Benjamin J. Raphael:
DeST-OT: Alignment of Spatiotemporal Transcriptomics Data. RECOMB 2024: 434-437 - Matthew M. Hong, David Froelicher, Ricky Magner, Victoria Popic, Bonnie Berger, Hyunghoon Cho:
Secure Discovery of Genetic Relatives Across Large-Scale and Distributed Genomic Datasets. RECOMB 2024: 308-313 - Kexin Huang, Romain Lopez, Jan-Christian Hütter, Takamasa Kudo, Antonio Rios, Aviv Regev:
Sequential Optimal Experimental Design of Perturbation Screens Guided by Multi-modal Priors. RECOMB 2024: 17-37 - Benjamin Giovanni Iovino, Haixu Tang
, Yuzhen Ye
:
Protein Domain Embeddings for Fast and Accurate Similarity Search. RECOMB 2024: 421-424 - Shani Jacobson, Roded Sharan:
An Integer Programming Framework for Identifying Stable Components in Asynchronous Boolean Networks. RECOMB 2024: 86-98 - Moonseong Jeong, Ali Pazokitoroudi, Zhengtong Liu, Sriram Sankararaman:
Scalable Summary Statistics-Based Heritability Estimation Method with Individual Genotype Level Accuracy. RECOMB 2024: 475-478 - Emaad Khwaja, Yun S. Song, Bo Huang
:
CELL-E: A Text-to-Image Transformer for Protein Image Prediction. RECOMB 2024: 185-200 - Spencer Krieger, John D. Kececioglu:
Computing Robust Optimal Factories in Metabolic Reaction Networks. RECOMB 2024: 253-269 - Avantika Lal
, David Garfield, Tommaso Biancalani, Gökcen Eraslan:
regLM: Designing Realistic Regulatory DNA with Autoregressive Language Models. RECOMB 2024: 332-335 - Alexander T. Leighton
, Yun William Yu
:
Secure Federated Boolean Count Queries Using Fully-Homomorphic Cryptography. RECOMB 2024: 54-67 - Lechuan Li, Ruth Dannenfelser, Charlie Cruz, Vicky Yao:
Enhancing Gene Set Analysis in Embedding Spaces: A Novel Best-Match Approach. RECOMB 2024: 396-399
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