• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 67 matches

• 2019
• 
  Sutanu Bhattacharya, Debswapna Bhattacharya:
  Contact-assisted Protein Threading: An Evolving New Direction. BCB 2019: 536
• 
  Sutanu Bhattacharya, Debswapna Bhattacharya:
  How Effective is Contact-assisted Protein Threading? BCB 2019: 553
• 2018
• 
  Justin S. Diamond, Yang Zhang:
  THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes. Database J. Biol. Databases Curation 2018: bay090 (2018)
• 
  Jianwei Zhu, Sheng Wang, Dongbo Bu, Jinbo Xu:
  Protein threading using residue co-variation and deep learning. Bioinform. 34(13): i263-i273 (2018)
• 2017
• 
  Daniel W. A. Buchan, David T. Jones:
  EigenTHREADER: analogous protein fold recognition by efficient contact map threading. Bioinform. 33(17): 2684-2690 (2017)
• 
  Yan Wang, Jian Wang, Ruiming Li, Qiang Shi, Zhidong Xue, Yang Zhang:
  ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assembly. Nucleic Acids Res. 45(Webserver-Issue): W400-W407 (2017)
• 2016
• 
  Yinglei Song, Junfeng Qu, Ying Xu, Liming Cai:
  A New Graph Theoretic Approach for Protein Threading. Fundam. Informaticae 145(2): 151-170 (2016)
• 2014
• 
  Pawel Gniewek, Andrzej Kolinski, Andrzej Kloczkowski, Dominik Gront:
  BioShell-Threading: versatile Monte Carlo package for protein 3D threading. BMC Bioinform. 15: 22 (2014)
• 
  Kevin J. Maurice:
  SSThread: Template-free protein structure prediction by threading pairs of contacting secondary structures followed by assembly of overlapping pairs. J. Comput. Chem. 35(8): 644-656 (2014)
• 
  Yinglei Song, Junfeng Qu:
  A New Graph Theoretic Approach for Protein Threading. ICIC (3) 2014: 501-507
• 2013
• 
  Jianzhu Ma, Sheng Wang, Feng Zhao, Jinbo Xu:
  Protein threading using context-specific alignment potential. Bioinform. 29(13): 257-265 (2013)
• 
  Zhidong Xue, Dong Xu, Yan Wang, Yang Zhang:
  ThreaDom: extracting protein domain boundary information from multiple threading alignments. Bioinform. 29(13): 247-256 (2013)
• 
  Michal Brylinski, Wei Pan Feinstein:
  eFindSite: Improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands. J. Comput. Aided Mol. Des. 27(6): 551-567 (2013)
• 
  Aysam Guerler, Brandon Govindarajoo, Yang Zhang:
  Mapping Monomeric Threading to Protein-Protein Structure Prediction. J. Chem. Inf. Model. 53(3): 717-725 (2013)
• 
  Wajeb Gharibi, Marwah Mohammed Bakri:
  Protein Threading Based on Nonlinear Integer Programming. CoRR abs/1310.0395 (2013)
• 2012
• 
  Jianzhu Ma, Jian Peng, Sheng Wang, Jinbo Xu:
  A conditional neural fields model for protein threading. Bioinform. 28(12): 59-66 (2012)
• 2011
• 
  Mingfu Shao, Sheng Wang, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu:
  Incorporating Ab Initio energy into threading approaches for protein structure prediction. BMC Bioinform. 12(S-1): S54 (2011)
• 
  Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat:
  Local protein threading by Mixed Integer Programming. Discret. Appl. Math. 159(16): 1707-1716 (2011)
• 2010
• 
  Jian Peng, Jinbo Xu:
  Low-homology protein threading. Bioinform. 26(12): 294-300 (2010)
• 2009
• 
  Mu Gao, Jeffrey Skolnick:
  A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome. PLoS Comput. Biol. 5(11) (2009)
• 
  Fei Luo, Lin Chen:
  Parallelizing the Protein Threading Problem in a Hybrid Peer-to-Peer Based High Performance Computing Platform. ACIS-ICIS 2009: 136-141
• 
  Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat:
  Protein Threading. CTW 2009: 341-344
• 
  Jian Peng, Jinbo Xu:
  Boosting Protein Threading Accuracy. RECOMB 2009: 31-45
• 2008
• 
  Vinay Pulim:
  Protein-protein interaction prediction using local threading. Massachusetts Institute of Technology, Cambridge, MA, USA, 2008
• 
  Kyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu:
  Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. J. Bioinform. Comput. Biol. 6(3): 585-602 (2008)
• 2007
• 
  Wei Zhong, Gulsah Altun, Xinmin Tian, Robert W. Harrison, Phang C. Tai, Yi Pan:
  Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology. J. Supercomput. 41(1): 1-16 (2007)
• 
  Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani:
  RßHpred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM and Protein Threading. CIT 2007: 1116-1121
• 
  Rumen Andonov, Guillaume Collet, Jean-François Gibrat, Antoine Marin, Vincent Poirriez, Nicola Yanev:
  Recent Advances in Solving the Protein Threading Problem. Grid Computing for Bioinformatics and Computational Biology 2007: 325-356
• 
  Rumen Andonov, Guillaume Collet, Jean-François Gibrat, Antoine Marin, Vincent Poirriez, Nicola Yanev:
  Recent Advances in Solving the Protein Threading Problem. CoRR abs/0707.3750 (2007)
• 2006
• 
  Tatsuya Akutsu, Morihiro Hayashida, Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto:
  Dynamic Programming and Clique Based Approaches for Protein Threading with Profiles and Constraints. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 89-A(5): 1215-1222 (2006)

skipping 37 more matches