• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 60 matches

• 2020
• 
  Takunori Yasuda, Yasuteru Shigeta, Ryuhei Harada:
  Efficient Conformational Sampling of Collective Motions of Proteins with Principal Component Analysis-Based Parallel Cascade Selection Molecular Dynamics. J. Chem. Inf. Model. 60(8): 4021-4029 (2020)
• 
  Xudong Chen, Ming Li, Tong Chen, Sidan Du, Yang Li:
  Estimating the Binding and Unbinding Rate of Motor Protein from Mitochondrial Motion. LifeTech 2020: 226-230
• 2019
• 
  Laura Orellana, Johan Gustavsson, Cathrine Bergh, Ozge Yoluk, Erik Lindahl:
  eBDIMS server: protein transition pathways with ensemble analysis in 2D-motion spaces. Bioinform. 35(18): 3505-3507 (2019)
• 
  Tobias Lemke, Andrej Berg, Alok Jain, Christine Peter:
  EncoderMap(II): Visualizing Important Molecular Motions with Improved Generation of Protein Conformations. J. Chem. Inf. Model. 59(11): 4550-4560 (2019)
• 
  Bogdan Barz, Jennifer Loschwitz, Birgit Strodel:
  Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations. PLoS Comput. Biol. 15(10) (2019)
• 2018
• 
  Cheng-Hong Yang, Kuo-Chuan Wu, Yu-Shiun Lin, Li-Yeh Chuang, Hsueh-Wei Chang:
  Protein folding prediction in the HP model using ions motion optimization with a greedy algorithm. BioData Min. 11(1): 17:1-17:14 (2018)
• 
  Caroline Ross, Bilal Nizami, Michael Glenister, Olivier Sheik Amamuddy, Ali Rana Atilgan, Canan Atilgan, Özlem Tastan Bishop:
  MODE-TASK: large-scale protein motion tools. Bioinform. 34(21): 3759-3763 (2018)
• 
  Weitao Sun:
  The Relationship Between Low-Frequency Motions and Community Structure of Residue Network in Protein Molecules. J. Comput. Biol. 25(1): 103-113 (2018)
• 
  Dominik Budday, Sigrid Leyendecker, Henry van den Bedem:
  Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion. J. Chem. Inf. Model. 58(10): 2108-2122 (2018)
• 
  Nancy M. Amato:
  Sampling-Based Motion Planning: From Intelligent CAD to Crowd Simulation to Protein Folding (Invited Talk). SWAT 2018: 1:1-1:1
• 
  Dominik Budday, Sigrid Leyendecker, Henry van den Bedem:
  Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion. CoRR abs/1802.08683 (2018)
• 2017
• 
  Kevin Molloy, David Morris, Amarda Shehu:
  ACM-BCB '17 Tutorial: Robotics-inspired Algorithms for Modeling Protein Structures and Motions. BCB 2017: 628
• 
  David Morris, Tatiana Maximova, Erion Plaku, Amarda Shehu:
  Out of one, many: Exploiting intrinsic motions to explore protein structure spaces. ICCABS 2017: 1
• 
  Vojtech Vonásek, Barbora Kozlíková:
  Tunnel detection in protein structures using sampling-based motion planning. RoMoCo 2017: 185-192
• 2016
• 
  Chinwe Ekenna, Shawna L. Thomas, Nancy M. Amato:
  Adaptive local learning in sampling based motion planning for protein folding. BMC Syst. Biol. 10(S-2): 49 (2016)
• 
  Xiaomin Ma, Hu Meng, Luhua Lai:
  Motions of Allosteric and Orthosteric Ligand-Binding Sites in Proteins are Highly Correlated. J. Chem. Inf. Model. 56(9): 1725-1733 (2016)
• 2015
• 
  Dagoberto Armenta-Medina, Ernesto Pérez-Rueda:
  Hybrid approaches for the detection of networks of critical residues involved in functional motions in protein families. BMC Bioinform. 16(S-3): A8 (2015)
• 
  Chinwe Ekenna, Shawna L. Thomas, Nancy M. Amato:
  Adaptive local learning in sampling based motion planning for protein folding. BIBM 2015: 61-68
• 
  Kevin Molloy, Amarda Shehu:
  Interleaving Global and Local Search for Protein Motion Computation. ISBRA 2015: 175-186
• 2014
• 
  Mikel Diez, Víctor Petuya, Luis Alfonso Martínez-Cruz, Alfonso Hernández:
  Insights into mechanism kinematics for protein motion simulation. BMC Bioinform. 15: 184 (2014)
• 
  Maxim Buzdalov, Sergey Knyazev, Yuri Porozov:
  Protein Conformation Motion Modeling Using Sep-CMA-ES. ICMLA 2014: 35-40
• 2013
• 
  Thomas L. Rodgers, David Burnell, Phil D. Townsend, Ehmke Pohl, Martin J. Cann, Mark R. Wilson, Tom C. B. McLeish:
  ΔΔPT: a comprehensive toolbox for the analysis of protein motion. BMC Bioinform. 14: 183 (2013)
• 
  Mikhail A. Iakhiaev, Alexei V. Iakhiaev:
  Mapping the intramolecular signal propagation pathways in protein using Bayesian change point analysis of atomic motions. Comput. Biol. Chem. 47: 89-95 (2013)
• 2012
• 
  Amarda Shehu, Lydia E. Kavraki:
  Modeling Structures and Motions of Loops in Protein Molecules. Entropy 14(2): 252-290 (2012)
• 
  Michael T. Zimmermann, Robert L. Jernigan:
  Protein Loop Dynamics Are Complex and Depend on the Motions of the Whole Protein. Entropy 14(4): 687-700 (2012)
• 
  Noah C. Benson, Valerie Daggett:
  Wavelet Analysis of protein Motion. Int. J. Wavelets Multiresolution Inf. Process. 10(4) (2012)
• 
  Brenton LeMesurier:
  Studying Davydov's ODE model of wave motion in α-helix protein using exactly energy-momentum conserving discretizations for Hamiltonian systems. Math. Comput. Simul. 82(7): 1239-1248 (2012)
• 
  Robyn Moncrief, William Gobber:
  A motion sensor interactive interface for viewing and manipulating protein structural data in 3D. SIGGRAPH Posters 2012: 122
• 2011
• 
  Samuel Flores, Mark B. Gerstein:
  Predicting protein ligand binding motions with the Conformation Explorer. BMC Bioinform. 12: 417 (2011)
• 
  Guang Hu, Servaas Michielssens, Samuel L. C. Moors, Arnout Ceulemans:
  Normal Mode Analysis of Trp RNA Binding Attenuation Protein: Structure and Collective Motions. J. Chem. Inf. Model. 51(9): 2361-2371 (2011)

skipping 30 more matches