• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 855 matches

• 2022
• 
  Xingming Zeng, Haiyuan Liu, Hao He:
  Prediction of Intrinsically Disordered Proteins Using Machine Learning Based on Low Complexity Methods. Algorithms 15(3): 86 (2022)
• 
  Yusuke Matsui, Yuichi Abe, Kohei Uno, Satoru Miyano:
  RoDiCE: robust differential protein co-expression analysis for cancer complexome. Bioinform. 38(5): 1269-1276 (2022)
• 
  Yang Yu, Dezhou Kong:
  Protein complexes detection based on node local properties and gene expression in PPI weighted networks. BMC Bioinform. 23(1): 24 (2022)
• 
  Suyu Mei:
  A framework combines supervised learning and dense subgraphs discovery to predict protein complexes. Frontiers Comput. Sci. 16(1): 161901 (2022)
• 
  Sivakumar Prasanth Kumar, Nandan Y. Dixit, Chirag N. Patel, Rakesh M. Rawal, Himanshu A. Pandya:
  PharmRF: A machine-learning scoring function to identify the best protein-ligand complexes for structure-based pharmacophore screening with high enrichments. J. Comput. Chem. 43(12): 847-863 (2022)
• 
  Ammar Ammar, Rachel Cavill, Chris T. A. Evelo, Egon L. Willighagen:
  PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow. J. Cheminformatics 14(1): 8 (2022)
• 
  Bhagyesh Varvdekar, Akshay Prabhakant, Marimuthu Krishnan:
  Response of Terahertz Protein Vibrations to Ligand Binding: Calmodulin-Peptide Complexes as a Case Study. J. Chem. Inf. Model. 62(7): 1669-1679 (2022)
• 
  Xianjin Xu, Xiaoqin Zou:
  Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment. J. Chem. Inf. Model. 62(1): 27-39 (2022)
• 2021
• 
  Nazar Zaki, Harsh Singh, Elfadil A. Mohamed:
  Identifying Protein Complexes in Protein-Protein Interaction Data Using Graph Convolutional Network. IEEE Access 9: 123717-123726 (2021)
• 
  Maozi Chen, Zhiwei Feng, Siyi Wang, Weiwei Lin, Xiang-Qun Xie:
  MCCS, a novel characterization method for protein-ligand complex. Briefings Bioinform. 22(4) (2021)
• 
  N. R. Siva Shanmugam, J. Jino Blessy, K. Veluraja, M. Michael Gromiha:
  Prediction of protein-carbohydrate complex binding affinity using structural features. Briefings Bioinform. 22(4) (2021)
• 
  Wei Wang, Wei Liu:
  PCLasso: a protein complex-based, group lasso-Cox model for accurate prognosis and risk protein complex discovery. Briefings Bioinform. 22(6) (2021)
• 
  Debby Dan Wang, Mengxu Zhu, Hong Yan:
  Computationally predicting binding affinity in protein-ligand complexes: free energy-based simulations and machine learning-based scoring functions. Briefings Bioinform. 22(3) (2021)
• 
  Zhourun Wu, Qing Liao, Bin Liu:
  idenPC-MIIP: identify protein complexes from weighted PPI networks using mutual important interacting partner relation. Briefings Bioinform. 22(2): 1972-1983 (2021)
• 
  Yumeng Yan, Sheng-You Huang:
  Accurate prediction of inter-protein residue-residue contacts for homo-oligomeric protein complexes. Briefings Bioinform. 22(5) (2021)
• 
  Wei Zhang, Qiaozhen Meng, Jijun Tang, Fei Guo:
  Exploring effectiveness of ab-initio protein-protein docking methods on a novel antibacterial protein complex dataset. Briefings Bioinform. 22(6) (2021)
• 
  Pep Amengual-Rigo, Juan Fernández-Recio, Victor Guallar:
  UEP: an open-source and fast classifier for predicting the impact of mutations in protein-protein complexes. Bioinform. 37(3): 334-341 (2021)
• 
  Varsha D. Badal, Petras J. Kundrotas, Ilya A. Vakser:
  Text mining for modeling of protein complexes enhanced by machine learning. Bioinform. 37(4): 497-505 (2021)
• 
  Hamed Khakzad, Lotta Happonen, Johan Malmström, Lars Malmström:
  Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data. Bioinform. 37(24): 4871-4872 (2021)
• 
  Olivier Mailhot, Rafael Najmanovich:
  The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes. Bioinform. 37(19): 3369-3371 (2021)
• 
  Sara Omranian, Angela Angeleska, Zoran Nikoloski:
  PC2P: parameter-free network-based prediction of protein complexes. Bioinform. 37(1): 73-81 (2021)
• 
  Debby Dan Wang, Haoran Xie, Hong Yan:
  Proteo-chemometrics interaction fingerprints of protein-ligand complexes predict binding affinity. Bioinform. 37(17): 2570-2579 (2021)
• 
  Sangmin Seo, Jonghwan Choi, Sanghyun Park, Jaegyoon Ahn:
  Binding affinity prediction for protein-ligand complex using deep attention mechanism based on intermolecular interactions. BMC Bioinform. 22(1): 542 (2021)
• 
  Serge Dossou, Mahmoud A. O. Dawood, Amr I. Zaineldin, Ibrahim A. Abouelsaad, Kumbukani Mzengereza, Ronick S. Shadrack, Yukun Zhang, Mohamed Elsharnouby, Hamada A. Ahmed, Mohammed F. El Basuini:
  Dynamical Hybrid System for Optimizing and Controlling Efficacy of Plant-Based Protein in Aquafeeds. Complex. 2021: 9957723:1-9957723:7 (2021)
• 
  Naeem Shirmohammady, Habib Izadkhah, Ayaz Isazadeh:
  PPI-GA: A Novel Clustering Algorithm to Identify Protein Complexes within Protein-Protein Interaction Networks Using Genetic Algorithm. Complex. 2021: 2132516:1-2132516:14 (2021)
• 
  Osman Burak Okan, Deniz Turgut, Canan Atilgan, Ali Rana Atilgan, Rahmi Ozisik:
  Could network structures generated with simple rules imposed on a cubic lattice reproduce the structural descriptors of globular proteins? J. Complex Networks 10(1) (2021)
• 
  Sunil Dehipawala, Eric Cheung, George Tremberger Jr., Tak Cheung:
  Entropy and Fractal Dimension Study of the TDP-43 Protein Low Complexity Domain Sequence in ALS Disease Severity and SARS-CoV-2 Gene Sequences in Virulence Variability. Entropy 23(8): 1038 (2021)
• 
  Vitor Pimentel, Diego C. B. Mariano, Letícia Xavier Silva Cantão, Luana Luiza Bastos, Pedro H. C. Fischer, Leonardo Henrique Franca de Lima, Alexandre Victor Fassio, Raquel Cardoso de Melo Minardi:
  VTR: A Web Tool for Identifying Analogous Contacts on Protein Structures and Their Complexes. Frontiers Bioinform. 1 (2021)
• 
  Gökçe Senger, Martin H. Schaefer:
  Protein Complex Organization Imposes Constraints on Proteome Dysregulation in Cancer. Frontiers Bioinform. 1 (2021)
• 
  Wei Zhou, Wei Chi, Wanting Shen, Wanying Dou, Junyi Wang, Xuechen Tian, Christoph Gehring, Aloysius Wong:
  Computational Identification of Functional Centers in Complex Proteins: A Step-by-Step Guide With Examples. Frontiers Bioinform. 1 (2021)

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