• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 15 matches

• 2015
• 
  Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He:
  A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data. J. Comput. Biol. 22(9): 837-843 (2015)
• 2012
• 
  Azadeh Saffarian, Mathieu Giraud, Antoine de Monte, Hélène Touzet:
  RNA Locally Optimal Secondary Structures. J. Comput. Biol. 19(10): 1120-1133 (2012)
• 
  Leong Lee, Jennifer L. Leopold, Ronald L. Frank:
  Protein secondary structure prediction using BLAST and exhaustive RT-RICO, the search for optimal segment length and threshold. CIBCB 2012: 35-42
• 2011
• 
  Yuan Li, Shaojie Zhang:
  Finding stable local optimal RNA secondary structures. Bioinform. 27(21): 2994-3001 (2011)
• 2010
• 
  Chenhua Huang, Xiangbo Yang, Zhihong He:
  Protein folding simulations of 2D HP model by the genetic algorithm based on optimal secondary structures. Comput. Biol. Chem. 34(3): 137-142 (2010)
• 
  Abel Licon, Michela Taufer, Ming-Ying Leung, Kyle L. Johnson:
  A Dynamic Programming Algorithm for Finding the Optimal Segmentation of an RNA Sequence in Secondary Structure Predictions. BICoB 2010: 165-170
• 2007
• 
  Peter Clote, Evangelos Kranakis, Danny Krizanc, Ladislav Stacho:
  Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov-Jacobson energy model. Discret. Appl. Math. 155(6-7): 759-787 (2007)
• 
  Takeyuki Tamura, Tatsuya Akutsu:
  Approximation Algorithms for Optimal RNA Secondary Structures Common to Multiple Sequences. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 90-A(5): 917-923 (2007)
• 
  Zafer Aydin, Yucel Altunbasak, Hakan Erdogan:
  Bayesian Protein Secondary Structure Prediction With Near-Optimal Segmentations. IEEE Trans. Signal Process. 55(7-1): 3512-3525 (2007)
• 2005
• 
  Juliette Martin, Jean-François Gibrat, François Rodolphe:
  Choosing the Optimal Hidden Markov Model for Secondary-Structure Prediction. IEEE Intell. Syst. 20(6): 19-25 (2005)
• 
  Peter Clote:
  An Efficient Algorithm to Compute the Landscape of Locally Optimal RNA Secondary Structures with Respect to the NussinovJacobson Energy Model. J. Comput. Biol. 12(1): 83-101 (2005)
• 
  Peter Clote:
  RNALOSS: a web server for RNA locally optimal secondary structures. Nucleic Acids Res. 33(Web-Server-Issue): 600-604 (2005)
• 2004
• 
  Yann Guermeur, Gianluca Pollastri, André Elisseeff, Dominique Zelus, Hélène Paugam-Moisy, Pierre Baldi:
  Combining protein secondary structure prediction models with ensemble methods of optimal complexity. Neurocomputing 56: 305-327 (2004)
• 2002
• 
  Sean R. Eddy:
  A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinform. 3: 18 (2002)
• 1985
• 
  Kenji Yamamoto, Hiroshi Yoshikura:
  Computer program for prediction of the optimal and suboptimal secondary structures of long RNA molecules. Comput. Appl. Biosci. 1(2): 89-94 (1985)