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Publication search results
found 124 matches
- 2024
- Qizhi Pei, Lijun Wu, Zhenyu He, Jinhua Zhu, Yingce Xia, Shufang Xie, Rui Yan:
Exploiting Pre-trained Models for Drug Target Affinity Prediction with Nearest Neighbors. CoRR abs/2407.15202 (2024) - 2023
- Jiacheng Lin, Lijun Wu, Jinhua Zhu, Xiaobo Liang, Yingce Xia, Shufang Xie, Tao Qin, Tie-Yan Liu:
R2-DDI: relation-aware feature refinement for drug-drug interaction prediction. Briefings Bioinform. 24(1) (2023) - Jinhua Zhu, Yingce Xia, Lijun Wu, Jiajun Deng, Wengang Zhou, Tao Qin, Tie-Yan Liu, Houqiang Li:
Masked Contrastive Representation Learning for Reinforcement Learning. IEEE Trans. Pattern Anal. Mach. Intell. 45(3): 3421-3433 (2023) - Shufang Xie, Rui Yan, Junliang Guo, Yingce Xia, Lijun Wu, Tao Qin:
Retrosynthesis Prediction with Local Template Retrieval. AAAI 2023: 5330-5338 - Griffin Adams, Bichlien Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad:
What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization. ACL (1) 2023: 10520-10542 - Zequn Liu, Wei Zhang, Yingce Xia, Lijun Wu, Shufang Xie, Tao Qin, Ming Zhang, Tie-Yan Liu:
MolXPT: Wrapping Molecules with Text for Generative Pre-training. ACL (2) 2023: 1606-1616 - Siun Kim, Jung-Hyun Won, David Seung U. Lee, Renqian Luo, Lijun Wu, Yingce Xia, Tao Qin, Howard Lee:
Revisiting Machine-Learning based Drug Repurposing: Drug Indications Are Not a Right Prediction Target. CHIL 2023: 100-116 - Qizhi Pei, Wei Zhang, Jinhua Zhu, Kehan Wu, Kaiyuan Gao, Lijun Wu, Yingce Xia, Rui Yan:
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations. EMNLP 2023: 1102-1123 - Zijie Geng, Shufang Xie, Yingce Xia, Lijun Wu, Tao Qin, Jie Wang, Yongdong Zhang, Feng Wu, Tie-Yan Liu:
De Novo Molecular Generation via Connection-aware Motif Mining. ICLR 2023 - Jinhua Zhu, Kehan Wu, Bohan Wang, Yingce Xia, Shufang Xie, Qi Meng, Lijun Wu, Tao Qin, Wengang Zhou, Houqiang Li, Tie-Yan Liu:
𝒪-GNN: incorporating ring priors into molecular modeling. ICLR 2023 - Guoqing Liu, Di Xue, Shufang Xie, Yingce Xia, Austin Tripp, Krzysztof Maziarz, Marwin H. S. Segler, Tao Qin, Zongzhang Zhang, Tie-Yan Liu:
Retrosynthetic Planning with Dual Value Networks. ICML 2023: 22266-22276 - Kaiyuan Gao, Lijun Wu, Jinhua Zhu, Tianbo Peng, Yingce Xia, Liang He, Shufang Xie, Tao Qin, Haiguang Liu, Kun He, Tie-Yan Liu:
Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design. KDD 2023: 506-517 - Jinhua Zhu, Yingce Xia, Lijun Wu, Shufang Xie, Wengang Zhou, Tao Qin, Houqiang Li, Tie-Yan Liu:
Dual-view Molecular Pre-training. KDD 2023: 3615-3627 - Qizhi Pei, Kaiyuan Gao, Lijun Wu, Jinhua Zhu, Yingce Xia, Shufang Xie, Tao Qin, Kun He, Tie-Yan Liu, Rui Yan:
FABind: Fast and Accurate Protein-Ligand Binding. NeurIPS 2023 - Jinpeng Li, Yingce Xia, Xin Cheng, Dongyan Zhao, Rui Yan:
Learning Disentangled Representation via Domain Adaptation for Dialogue Summarization. WWW 2023: 1693-1702 - Guoqing Liu, Di Xue, Shufang Xie, Yingce Xia, Austin Tripp, Krzysztof Maziarz, Marwin H. S. Segler, Tao Qin, Zongzhang Zhang, Tie-Yan Liu:
Retrosynthetic Planning with Dual Value Networks. CoRR abs/2301.13755 (2023) - Zijie Geng, Shufang Xie, Yingce Xia, Lijun Wu, Tao Qin, Jie Wang, Yongdong Zhang, Feng Wu, Tie-Yan Liu:
De Novo Molecular Generation via Connection-aware Motif Mining. CoRR abs/2302.01129 (2023) - Griffin Adams, Bichlien H. Nguyen, Jake Smith, Yingce Xia, Shufang Xie, Anna Ostropolets, Budhaditya Deb, Yuan-Jyue Chen, Tristan Naumann, Noémie Elhadad:
What are the Desired Characteristics of Calibration Sets? Identifying Correlates on Long Form Scientific Summarization. CoRR abs/2305.07615 (2023) - Zequn Liu, Wei Zhang, Yingce Xia, Lijun Wu, Shufang Xie, Tao Qin, Ming Zhang, Tie-Yan Liu:
MolXPT: Wrapping Molecules with Text for Generative Pre-training. CoRR abs/2305.10688 (2023) - Shufang Xie, Rui Yan, Junliang Guo, Yingce Xia, Lijun Wu, Tao Qin:
Retrosynthesis Prediction with Local Template Retrieval. CoRR abs/2306.04123 (2023) - Qizhi Pei, Kaiyuan Gao, Lijun Wu, Jinhua Zhu, Yingce Xia, Shufang Xie, Tao Qin, Kun He, Tie-Yan Liu, Rui Yan:
FABind: Fast and Accurate Protein-Ligand Binding. CoRR abs/2310.06763 (2023) - Qizhi Pei, Wei Zhang, Jinhua Zhu, Kehan Wu, Kaiyuan Gao, Lijun Wu, Yingce Xia, Rui Yan:
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations. CoRR abs/2310.07276 (2023) - 2022
- Renqian Luo, Liai Sun, Yingce Xia, Tao Qin, Sheng Zhang, Hoifung Poon, Tie-Yan Liu:
BioGPT: generative pre-trained transformer for biomedical text generation and mining. Briefings Bioinform. 23(6) (2022) - Lijun Wu, Chengcan Yin, Jinhua Zhu, Zhen Wu, Liang He, Yingce Xia, Shufang Xie, Tao Qin, Tie-Yan Liu:
SPRoBERTa: protein embedding learning with local fragment modeling. Briefings Bioinform. 23(6) (2022) - Yang Fan, Yingce Xia, Jinhua Zhu, Lijun Wu, Shufang Xie, Tao Qin:
Back translation for molecule generation. Bioinform. 38(5): 1244-1251 (2022) - Yutai Hou, Yingce Xia, Lijun Wu, Shufang Xie, Yang Fan, Jinhua Zhu, Tao Qin, Tie-Yan Liu:
Discovering drug-target interaction knowledge from biomedical literature. Bioinform. 38(22): 5100-5107 (2022) - Xueqing Wu, Yingce Xia, Jinhua Zhu, Lijun Wu, Shufang Xie, Tao Qin:
A study of BERT for context-aware neural machine translation. Mach. Learn. 111(3): 917-935 (2022) - Shufang Xie, Yingce Xia, Lijun Wu, Yiqing Huang, Yang Fan, Tao Qin:
End-to-end entity-aware neural machine translation. Mach. Learn. 111(3): 1181-1203 (2022) - Jinhua Zhu, Yingce Xia, Chang Liu, Lijun Wu, Shufang Xie, Yusong Wang, Tong Wang, Tao Qin, Wengang Zhou, Houqiang Li, Haiguang Liu, Tie-Yan Liu:
Direct Molecular Conformation Generation. Trans. Mach. Learn. Res. 2022 (2022) - Wendi Li, Xiao Yang, Weiqing Liu, Yingce Xia, Jiang Bian:
DDG-DA: Data Distribution Generation for Predictable Concept Drift Adaptation. AAAI 2022: 4092-4100
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