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- Sven Rahmann
Saarland University, Germany
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Publication search results
found 98 matches
- 2024
- Luca Renders
, Lore Depuydt
, Sven Rahmann
, Jan Fostier
:
Lossless Approximate Pattern Matching: Automated Design of Efficient Search Schemes. J. Comput. Biol. 31(10): 975-989 (2024) - Luca Renders
, Lore Depuydt
, Sven Rahmann
, Jan Fostier
:
Automated Design of Efficient Search Schemes for Lossless Approximate Pattern Matching. RECOMB 2024: 164-184 - Jens Zentgraf, Sven Rahmann:
Swiftly Identifying Strongly Unique k-Mers. WABI 2024: 15:1-15:15 - 2022
- Jens Zentgraf
, Sven Rahmann
:
Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo Hash Tables. WABI 2022: 12:1-12:20 - Sven Rahmann, Alexander Schramm, Johannes Köster:
Cancer Diagnostics and Therapy from Molecular Data. Mach. Learn. under Resour. Constraints Vol. 3 (3) 2022: 43-57 - Bianca K. Stöcker, Till Schäfer, Petra Mutzel, Johannes Köster, Nils M. Kriege, Sven Rahmann:
Protein Complex Similarity. Mach. Learn. under Resour. Constraints Vol. 3 (3) 2022: 85-102 - Christina Boucher
, Sven Rahmann
:
22nd International Workshop on Algorithms in Bioinformatics, WABI 2022, September 5-7, 2022, Potsdam, Germany. LIPIcs 242, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2022, ISBN 978-3-95977-243-3 [contents] - 2021
- Jens Zentgraf, Sven Rahmann
:
Fast lightweight accurate xenograft sorting. Algorithms Mol. Biol. 16(1): 2 (2021) - Julia Markowski
, Rieke Kempfer
, Alexander Kukalev
, Ibai Irastorza-Azcarate
, Gesa Loof
, Birte Kehr
, Ana Pombo
, Sven Rahmann
, Roland F. Schwarz
:
GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data. Bioinform. 37(19): 3128-3135 (2021) - Felix Mölder
, Ulrik Stervbo, Lucie Loyal
, Petra Bacher
, Nina Babel
, Sven Rahmann
:
Rapid T-cell receptor interaction grouping with ting. Bioinform. 37(20): 3444-3448 (2021) - Tizian Schulz
, Roland Wittler
, Sven Rahmann
, Faraz Hach
, Jens Stoye
:
Detecting high-scoring local alignments in pangenome graphs. Bioinform. 37(16): 2266-2274 (2021) - Felix Mölder
, Kim Philipp Jablonski
, Brice Letcher
, Michael B. Hall
, Christopher Tomkins-Tinch
, Vanessa V. Sochat
, Jan Forster, Soohyun Lee
, Sven Twardziok, Alexander Kanitz
, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
:
Sustainable data analysis with Snakemake. F1000Research 10: 33 (2021) - 2020
- Marius Wöste
, Elsa Leitão, Sandra Laurentino
, Bernhard Horsthemke, Sven Rahmann
, Christopher Schröder:
wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data. BMC Bioinform. 21(1): 169 (2020) - Jens Zentgraf, Henning Timm, Sven Rahmann:
Cost-optimal assignment of elements in genome-scale multi-way bucketed Cuckoo hash tables. ALENEX 2020: 186-198 - Jens Zentgraf
, Sven Rahmann
:
Fast Lightweight Accurate Xenograft Sorting. WABI 2020: 4:1-4:16 - Elias Kuthe
, Sven Rahmann
:
Engineering Fused Lasso Solvers on Trees. SEA 2020: 23:1-23:14 - 2019
- Bianca K. Stöcker
, Till Schäfer
, Petra Mutzel
, Johannes Köster
, Nils M. Kriege
, Sven Rahmann
:
Protein Complex Similarity Based on Weisfeiler-Lehman Labeling. SISAP 2019: 308-322 - 2018
- Johannes Köster, Sven Rahmann
:
Snakemake - a scalable bioinformatics workflow engine. Bioinform. 34(20): 3600 (2018) - Till Hartmann
, Sven Rahmann:
Spalter: A Meta Machine Learning Approach to Distinguish True DNA Variants from Sequencing Artefacts. WABI 2018: 13:1-13:8 - 2017
- Christopher Schröder, Sven Rahmann
:
A hybrid parameter estimation algorithm for beta mixtures and applications to methylation state classification. Algorithms Mol. Biol. 12(1): 21:1-21:12 (2017) - Jens Quedenfeld, Sven Rahmann:
Analysis of Min-Hashing for Variant Tolerant DNA Read Mapping. WABI 2017: 21:1-21:13 - Jens Quedenfeld, Sven Rahmann:
Variant tolerant read mapping using min-hashing. CoRR abs/1702.01703 (2017) - 2016
- Bianca K. Stöcker, Johannes Köster, Sven Rahmann
:
SimLoRD: Simulation of Long Read Data. Bioinform. 32(17): 2704-2706 (2016) - Christopher Schröder, Sven Rahmann:
A Hybrid Parameter Estimation Algorithm for Beta Mixtures and Applications to Methylation State Classification. WABI 2016: 307-319 - 2015
- Dominik Kopczynski
, Sven Rahmann
:
An online peak extraction algorithm for ion mobility spectrometry data. Algorithms Mol. Biol. 10: 17 (2015) - Martin Eisenacher
, Jörg Rahnenführer
, Axel Mosig, Sven Rahmann
:
Poster abstracts of GCB 2015. PeerJ Prepr. 3: e1350 (2015) - Nina Hesse, Christopher Schröder, Sven Rahmann:
An optimization approach to detect differentially methylated regions from Whole Genome Bisulfite Sequencing data. PeerJ Prepr. 3: e1287 (2015) - Axel Mosig, Jörg Rahnenführer, Martin Eisenacher, Sven Rahmann
:
Invited presentations, junior research groups and research highlights at GCB 2015. PeerJ Prepr. 3: e1352 (2015) - Christopher Schröder, Sven Rahmann:
Efficient duplicate rate estimation from subsamples of sequencing libraries. PeerJ Prepr. 3: e1298 (2015) - 2014
- Marianna D'Addario, Dominik Kopczynski
, Jörg Ingo Baumbach, Sven Rahmann
:
A modular computational framework for automated peak extraction from ion mobility spectra. BMC Bioinform. 15: 25 (2014)
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