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Publication search results
found 35 matches
- 2024
- Anna Kravchenko, Sjoerd Jacob de Vries, Malika Smaïl-Tabbone, Isaure Chauvot de Beauchêne:
HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses. BMC Bioinform. 25(1): 129 (2024) - Sjoerd de Vries, Dirk Thierens:
Learning with Confidence: Training Better Classifiers from Soft Labels. CoRR abs/2409.16071 (2024) - 2023
- Yasaman Karami, Samuel Murail, Julien Giribaldi, Benjamin Lefranc, Florian Defontaine, Olivier Lesouhaitier, Jérôme Leprince, Sjoerd Jacob de Vries, Pierre Tufféry:
Exploring a Structural Data Mining Approach to Design Linkers for Head-to-Tail Peptide Cyclization. J. Chem. Inf. Model. 63(20): 6436-6450 (2023) - Julien Rey, Samuel Murail, Sjoerd Jacob de Vries, Philippe Derreumaux, Pierre Tufféry:
PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution. Nucleic Acids Res. 51(W1): 432-437 (2023) - Sjoerd de Vries, Dirk Thierens:
Generating the Ground Truth: Synthetic Data for Label Noise Research. CoRR abs/2309.04318 (2023) - 2022
- Antoine Moniot, Yann Guermeur, Sjoerd Jacob de Vries, Isaure Chauvot de Beauchêne:
ProtNAff: protein-bound Nucleic Acid filters and fragment libraries. Bioinform. 38(16): 3911-3917 (2022) - Sjoerd de Vries, Thijs ten Doesschate, Joan E. E. Totté, Judith W. Heutz, Yvette G. T. Loeffen, Jan Jelrik Oosterheert, Dirk Thierens, Edwin Boel:
A semi-supervised decision support system to facilitate antibiotic stewardship for urinary tract infections. Comput. Biol. Medicine 146: 105621 (2022) - Dana Schrotenboer, Efthymios Constantinides, Carolina Herrando, Sjoerd de Vries:
The Effects of Omni-Channel Retailing on Promotional Strategy. J. Theor. Appl. Electron. Commer. Res. 17(2): 360-374 (2022) - 2021
- Wouter Vollenbroek, Sjoerd de Vries, Jan van Dijk:
Supporting Social Capital by Utilizing Community Network Positions. Int. J. e Collab. 17(2): 40-54 (2021) - Sjoerd de Vries, Dirk Thierens:
A reliable ensemble based approach to semi-supervised learning. Knowl. Based Syst. 215: 106738 (2021) - 2019
- Yasaman Karami, Julien Rey, Guillaume Postic, Samuel Murail, Pierre Tufféry, Sjoerd Jacob de Vries:
DaReUS-Loop: a web server to model multiple loops in homology models. Nucleic Acids Res. 47(Webserver-Issue): W423-W428 (2019) - Auke Reitsma, Ton Spil, Sjoerd de Vries:
Using Laddering to Understand the Use of Gamified Wearables by Seniors. ICT4AWE 2019: 92-103 - 2018
- Luisa Schulz, Ton Spil, Sjoerd de Vries:
Gamified Wearables in Obesity Therapy for Youth. AMCIS 2018 - 2017
- Sjoerd Jacob de Vries, Martin Zacharias:
Fast and accurate grid representations for atom-based docking with partner flexibility. J. Comput. Chem. 38(17): 1538-1546 (2017) - Sjoerd Jacob de Vries, Julien Rey, Christina E. M. Schindler, Martin Zacharias, Pierre Tufféry:
The pepATTRACT web server for blind, large-scale peptide-protein docking. Nucleic Acids Res. 45(Webserver-Issue): W361-W364 (2017) - Ardion Beldad, Fitria Avicenna, Sjoerd de Vries:
The Effects of Online Review Message Appeal and Online Review Source Across Two Product Types on Review Credibility, Product Attitude, and Purchase Intention. HCI (24) 2017: 163-173 - 2016
- Isaure Chauvot de Beauchêne, Sjoerd Jacob de Vries, Martin Zacharias:
Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach. PLoS Comput. Biol. 12(1) (2016) - Wouter Vollenbroek, Sjoerd de Vries:
Interaction Patterns in Web-based Knowledge Communities: Two-Mode Network Approach. KMIS 2016: 100-107 - 2014
- Wouter Vollenbroek, Sjoerd de Vries, Efthymios Constantinides, Piet Kommers:
Identification of influence in social media communities. Int. J. Web Based Communities 10(3): 280-297 (2014) - 2013
- Wouter Vollenbroek, Efthymios Constantinides, Sjoerd de Vries:
Co-creation in Social Media Platforms: End-users as Innovation Partners - Online Co-innovation within the Open Discovery Space. WEBIST 2013: 381-385 - 2012
- Tsjerk A. Wassenaar, Marc van Dijk, Nuno Loureiro-Ferreira, Gijs van der Schot, Sjoerd Jacob de Vries, Christophe Schmitz, Johan van der Zwan, Rolf Boelens, Andrea Giachetti, Lucio Ferella, Antonio Rosato, Ivano Bertini, Torsten Herrmann, Hendrik R. A. Jonker, Anurag Bagaria, Victor Jaravine, Peter Güntert, Harald Schwalbe, Wim F. Vranken, Jurgen F. Doreleijers, Gert Vriend, Geerten W. Vuister, Daniel Franke, Alexey Kikhney, Dmitri I. Svergun, Rasmus H. Fogh, John M. C. Ionides, Ernest D. Laue, Chris A. E. M. Spronk, Simonas Jurksa, Marco Verlato, Simone Badoer, Stefano Dal Pra, Mirco Mazzucato, Eric Frizziero, Alexandre M. J. J. Bonvin:
WeNMR: Structural Biology on the Grid. J. Grid Comput. 10(4): 743-767 (2012) - Sjoerd J. L. van Wijk, Adrien S. J. Melquiond, Sjoerd Jacob de Vries, H. Th. Marc Timmers, Alexandre M. J. J. Bonvin:
Dynamic Control of Selectivity in the Ubiquitination Pathway Revealed by an ASP to GLU Substitution in an Intra-Molecular Salt-Bridge Network. PLoS Comput. Biol. 8(11) (2012) - 2011
- Martijn L. van Emmerik, Sjoerd C. de Vries, Jelte E. Bos:
Internal and external fields of view affect cybersickness. Displays 32(4): 169-174 (2011) - Tsjerk A. Wassenaar, Marc van Dijk, Nuno Loureiro-Ferreira, Gijs van der Schot, Sjoerd Jacob de Vries, Christophe Schmitz, Johan van der Zwan, Rolf Boelens, Andrea Giachetti, Lucio Ferella, Antonio Rosato, Ivano Bertini, Torsten Herrmann, Hendrik R. A. Jonker, Anurag Bagaria, Victor Jaravine, Peter Güntert, Harald Schwalbe, Wim F. Vranken, Jurgen F. Doreleijers, Gert Vriend, Geerten W. Vuister, Daniel Franke, Alexey Kikhney, Dmitri I. Svergun, Rasmus H. Fogh, John M. C. Ionides, Ernest D. Laue, Chris A. E. M. Spronk, Marco Verlato, Simone Badoer, Stefano Dal Pra, Mirco Mazzucato, Eric Frizziero, Alexandre M. J. J. Bonvin:
WeNMR: Structural Biology on the Grid. IWSG-Life 2011 - 2010
- Jurjen Jansen, Sjoerd de Vries, Paul van Schaik:
The Contextual Benchmark Method: Benchmarking e-Government services. Gov. Inf. Q. 27(3): 213-219 (2010) - Sjoerd de Vries, Paul van Schaik, Dick Slettenhaar:
Schooltrack: an EPSS for Action Research. Electronic Performance Support 2010 - 2009
- Jeroen H. Hogema, Sjoerd C. de Vries, Jan B. F. van Erp, Raymond J. Kiefer:
A Tactile Seat for Direction Coding in Car Driving: Field Evaluation. IEEE Trans. Haptics 2(4): 181-188 (2009) - Jurjen Jansen, Sjoerd de Vries, Thea van der Geest, Rex Arendsen, Jan van Dijk:
The State of Client-Centered Public Service Delivery in the Netherlands. EGOV 2009: 293-304 - 2006
- Sjoerd Jacob de Vries, Alexandre M. J. J. Bonvin:
Intramolecular surface contacts contain information about protein-protein interface regions. Bioinform. 22(17): 2094-2098 (2006) - 2004
- Sjoerd de Vries, Piet Kommers:
Online knowledge communities: future trends and research issues. Int. J. Web Based Communities 1(1): 115-123 (2004)
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