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Publication search results
found 59 matches
- 2024
- Krister M. Swenson:
A Simple and Efficient Algorithm for Sorting Signed Permutations by Reversals. CoRR abs/2403.20165 (2024) - 2023
- Afif Elghraoui
, Siavash Mirarab, Krister M. Swenson
, Faramarz Valafar
:
Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates. Bioinform. 39(1) (2023) - Manuel Lafond, Anne Bergeron, Krister M. Swenson:
Two Strikes Against the Phage Recombination Problem. RECOMB-CG 2023: 68-83 - 2022
- Anne Bergeron, Marie-Jean Meurs, Romy Valiquette-Labonté, Krister M. Swenson:
On the Comparison of Bacteriophage Populations. RECOMB-CG 2022: 3-20 - Krister M. Swenson
, Afif Elghraoui
, Faramarz Valafar
, Siavash Mirarab
, Mathias Weller
:
Quantifying Hierarchical Conflicts in Homology Statements. RECOMB-CG 2022: 146-167 - 2021
- Biing-Feng Wang
, Krister M. Swenson:
A Faster Algorithm for Computing the Kernel of Maximum Agreement Subtrees. IEEE ACM Trans. Comput. Biol. Bioinform. 18(2): 416-430 (2021) - 2019
- Pijus Simonaitis
, Annie Chateau, Krister M. Swenson
:
A general framework for genome rearrangement with biological constraints. Algorithms Mol. Biol. 14(1): 15:1-15:14 (2019) - Benjamin Linard
, Krister M. Swenson, Fabio Pardi:
Rapid alignment-free phylogenetic identification of metagenomic sequences. Bioinform. 35(18): 3303-3312 (2019) - Krister M. Swenson, Mathieu Blanchette:
Large-scale mammalian genome rearrangements coincide with chromatin interactions. Bioinform. 35(14): i117-i126 (2019) - Pijus Simonaitis
, Annie Chateau, Krister M. Swenson
:
Weighted Minimum-Length Rearrangement Scenarios. WABI 2019: 13:1-13:17 - Jakub Truszkowski
, Olivier Gascuel, Krister M. Swenson
:
Rapidly Computing the Phylogenetic Transfer Index. WABI 2019: 20:1-20:12 - 2018
- Pijus Simonaitis, Krister M. Swenson
:
Finding local genome rearrangements. Algorithms Mol. Biol. 13(1): 9:1-9:14 (2018) - Pijus Simonaitis, Annie Chateau, Krister M. Swenson:
A General Framework for Genome Rearrangement with Biological Constraints. RECOMB-CG 2018: 49-71 - Pijus Simonaitis, Annie Chateau, Krister M. Swenson:
A framework for cost-constrained genome rearrangement under Double Cut and Join. CoRR abs/1802.07515 (2018) - 2017
- Sylvain Pulicani
, Pijus Simonaitis, Eric Rivals
, Krister M. Swenson:
Rearrangement Scenarios Guided by Chromatin Structure. RECOMB-CG 2017: 141-155 - Pijus Simonaitis, Krister M. Swenson:
Finding Local Genome Rearrangements. WABI 2017: 24:1-24:13 - 2016
- Krister M. Swenson, Pijus Simonaitis
, Mathieu Blanchette:
Models and algorithms for genome rearrangement with positional constraints. Algorithms Mol. Biol. 11: 13 (2016) - Sèverine Bérard, Annie Chateau, Nicolas Pompidor, Paul Guertin, Anne Bergeron, Krister M. Swenson:
Aligning the unalignable: bacteriophage whole genome alignments. BMC Bioinform. 17: 30 (2016) - 2015
- Krister M. Swenson, Mathieu Blanchette:
Models and Algorithms for Genome Rearrangement with Positional Constraints. WABI 2015: 243-256 - 2014
- Riccardo Dondi, Nadia El-Mabrouk, Krister M. Swenson:
Gene tree correction for reconciliation and species tree inference: Complexity and algorithms. J. Discrete Algorithms 25: 51-65 (2014) - 2013
- Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk:
Gene tree correction guided by orthology. BMC Bioinform. 14(S-15): S5 (2013) - Krister M. Swenson, Paul Guertin, Hugo Deschênes, Anne Bergeron
:
Reconstructing the modular recombination history of Staphylococcus aureus phages. BMC Bioinform. 14(S-15): S17 (2013) - Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk:
Ancestral Genome Organization: An Alignment Approach. J. Comput. Biol. 20(4): 280-295 (2013) - Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk:
Error Detection and Correction of Gene Trees. Models and Algorithms for Genome Evolution 2013: 261-285 - 2012
- Krister M. Swenson, Andrea Doroftei, Nadia El-Mabrouk:
Gene tree correction for reconciliation and species tree inference. Algorithms Mol. Biol. 7: 31 (2012) - Olivier Tremblay Savard, Krister M. Swenson:
A graph-theoretic approach for inparalog detection. BMC Bioinform. 13(S-19): S16 (2012) - Krister M. Swenson, Nadia El-Mabrouk:
Gene trees and species trees: irreconcilable differences. BMC Bioinform. 13(S-19): S15 (2012) - Krister M. Swenson, Eric C. H. Chen, Nicholas D. Pattengale, David Sankoff:
The Kernel of Maximum Agreement Subtrees. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1023-1031 (2012) - Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron:
On the Comparison of Sets of Alternative Transcripts. ISBRA 2012: 201-212 - Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk:
Evolution of Genome Organization by Duplication and Loss: An Alignment Approach. RECOMB 2012: 94-112
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