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Publication search results
found 21 matches
- 2024
- Rachel Fensham, Tyne Daile Sumner, Nat Cutter, George Buchanan, Rui Liu, Justin Munoz, James Smithies, Ivy Zheng, David Carlin, Erik Champion, Hugh Craig, Scott East, Chris Hay, Lisa M. Given, John Macarthur, David McMeekin, Joanna Mendelssohn, Deborah van der Plaat:
Towards a National Data Architecture for Cultural Collections: Designing the Australian Cultural Data Engine. Digit. Humanit. Q. 18(2) (2024) - 2023
- Ahmad Asgharian Rezaei, Justin Munoz, Mahdi Jalili
, Hamid Khayyam:
A machine learning-based approach for vital node identification in complex networks. Expert Syst. Appl. 214: 119086 (2023) - Barbara R. Terlouw
, Kai Blin
, Jorge C. Navarro-Muñoz
, Nicole E. Avalon
, Marc G. Chevrette
, Susan Egbert
, Sanghoon Lee
, David Meijer
, Michael J. Recchia
, Zachary L. Reitz
, Jeffrey A. van Santen
, Nelly Selem Mojica
, Thomas Tørring
, Liana Zaroubi
, Mohammad Alanjary
, Gajender Aleti
, César Aguilar
, Suhad A. Al-Salihi
, Hannah E. Augustijn
, J. Abraham Avelar-Rivas, Luis A. Avitia-Domínguez
, Francisco Barona-Gómez
, Jordan Bernaldo-Agüero
, Vincent A. Bielinski
, Friederike Biermann
, Thomas J. Booth
, J. Carrion Bravo, Raquel Castelo-Branco, Fernanda O. Chagas
, Pablo Cruz-Morales
, Chao Du
, Katherine R. Duncan
, Athina Gavriilidou
, Damien Gayrard
, Karina Gutiérrez-García, Kristina Haslinger
, Eric J. N. Helfrich
, Justin J. J. van der Hooft
, Afif P. Jati
, Edward Kalkreuter
, Nikolaos Kalyvas
, Kyo Bin Kang
, Satria A. Kautsar
, Wonyong Kim
, Aditya M. Kunjapur
, Yong-Xin Li
, Geng-Min Lin
, Catarina Loureiro
, Joris J. R. Louwen
, Nico l L. Louwen
, George Lund
, Jonathan Parra
, Benjamin Philmus
, Bita Pourmohsenin
, Lotte U. Pronk
, Adriana Rego
, Devasahayam Arokia Balaya Rex
, Serina L. Robinson
, L. Rodrigo Rosas-Becerra
, Eve T. Roxborough
, Michelle A. Schorn
, Darren J. Scobie
, Kumar Saurabh Singh
, Nika Sokolova
, Xiaoyu Tang
, Daniel W. Udwary
, Aruna Vigneshwari
, Kristiina Vind
, Sophie P. J. M. Vromans
, Valentin Waschulin
, Sam E. Williams
, Jaclyn M. Winter
, Thomas E. Witte
, Huali Xie
, Dong Yang
, Jingwei Yu
, Mitja Zdouc
, Zheng Zhong
, Jérôme Collemare, Roger G. Linington
, Tilmann Weber
, Marnix H. Medema
:
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Res. 51(D1): 603-610 (2023) - Julie M. Birkholz, Ingo Börner, Joanna Byszuk, Sally Chambers, Vera Maria Charvat, Silvie Cinková, Tess Dejaeghere, Julia Dudar, Matej Durco, Maciej Eder, Jennifer Edmond, Evgeniia Fileva, Frank Fischer, Vicky Garnett, Serge Heiden, Michal Kren, Bartlomiej Kunda, Sabine Laszakovits, Michal Mrugalski, Eliza Papaki, Marco Raciti, Stefan Resch, Salvador Ros, Christof Schöch, Artjoms Sela, Toma Tasovac, Justin Tonra, Erzsébet Tóth-Czifra, Peer Trilcke, Karina van Dalen-Oskam, Lisanne van Rossum:
Computational Literary Studies Infrastructure (CLS INFRA): Initial Findings and Conclusions for the Field. DH 2023 - J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti
, Sierra A. T. Moxon, Vida Ravanmehr, Seth Carbon, Lauren E. Chan, Katherina Cortes, Kent A. Shefchek, Glass Elsarboukh, James P. Balhoff, Tommaso Fontana, Nicolas Matentzoglu, Richard M. Bruskiewich, Anne E. Thessen, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall, Justin T. Reese:
KG-Hub - Building and Exchanging Biological Knowledge Graphs. CoRR abs/2302.10800 (2023) - Sabrina Toro, Anna V. Anagnostopoulos, Sue Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana
, Monica C. Munoz-Torres, Shawn T. O'Neil, David Osumi-Sutherland, Aleix Puig, Justin P. Reese, Leonore Reiser, Sofia M. C. Robb, Troy Ruemping, James Seager, Eric Sid, Raymund Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall:
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). CoRR abs/2312.10904 (2023) - 2022
- Justin Munoz
, Mahdi Jalili
, Laleh Tafakori
:
Hierarchical classification for account code suggestion. Knowl. Based Syst. 251: 109302 (2022) - Ahmad Asgharian Rezaei, Justin Munoz, Mahdi Jalili, Hamid Khayyam:
Vital Node Identification in Complex Networks Using a Machine Learning-Based Approach. CoRR abs/2202.06229 (2022) - Sixing Yu, Phuong Nguyen, Waqwoya Abebe, Justin Stanley, J. Pablo Muñoz, Ali Jannesari:
Resource-Aware Heterogeneous Federated Learning using Neural Architecture Search. CoRR abs/2211.05716 (2022) - 2021
- Justin Munoz
, Ahmad Asgharian Rezaei, Mahdi Jalili
, Laleh Tafakori
:
Deep learning based bi-level approach for proactive loan prospecting. Expert Syst. Appl. 185: 115607 (2021) - Justin T. Reese
, Deepak R. Unni
, Tiffany J. Callahan
, Luca Cappelletti
, Vida Ravanmehr, Seth Carbon
, Kent A. Shefchek, Benjamin M. Good
, James P. Balhoff
, Tommaso Fontana
, Hannah Blau
, Nicolas Matentzoglu
, Nomi L. Harris
, Monica C. Munoz-Torres, Melissa A. Haendel
, Peter N. Robinson, Marcin P. Joachimiak
, Christopher J. Mungall
:
KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response. Patterns 2(1): 100155 (2021) - 2020
- Satria A. Kautsar
, Kai Blin
, Simon Shaw, Jorge C. Navarro-Muñoz
, Barbara R. Terlouw
, Justin J. J. van der Hooft
, Jeffrey A. van Santen
, Vittorio Tracanna
, Hernando G. Suarez Duran
, Victòria Pascal Andreu
, Nelly Selem Mojica
, Mohammad Alanjary
, Serina L. Robinson
, George Lund
, Samuel C. Epstein
, Ashley C. Sisto
, Louise K. Charkoudian
, Jérôme Collemare
, Roger G. Linington
, Tilmann Weber
, Marnix H. Medema
:
MIBiG 2.0: a repository for biosynthetic gene clusters of known function. Nucleic Acids Res. 48(Database-Issue): D454-D458 (2020) - Sushma Naithani
, Parul Gupta, Justin Preece, Peter D'Eustachio
, Justin Elser, Priyanka Garg, Daemon A. Dikeman, Jason Kiff, Justin Cook
, Andrew Olson, Sharon Wei, Marcela K. Tello-Ruiz, Antonio Fabregat Mundo
, Alfonso Muñoz-Pomer Fuentes, Suhaib Mohammed
, Tiejun Cheng, Evan Bolton
, Irene Papatheodorou
, Lincoln Stein, Doreen Ware, Pankaj Jaiswal
:
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. Nucleic Acids Res. 48(Database-Issue): D1093-D1103 (2020) - Kent A. Shefchek
, Nomi L. Harris, Michael A. Gargano, Nicolas Matentzoglu
, Deepak R. Unni
, Matthew H. Brush, Dan Keith, Tom Conlin, Nicole A. Vasilevsky
, Xingmin Aaron Zhang, James P. Balhoff
, Larry Babb, Susan M. Bello, Hannah Blau, Yvonne M. Bradford, Seth Carbon, Leigh Carmody
, Lauren E. Chan, Valentina Cipriani, Alayne Cuzick
, Maria G. Della Rocca, Nathan A. Dunn, Shahim Essaid, Petra Fey, Christian A. Grove, Jean-Philippe F. Gourdine, Ada Hamosh, Midori A. Harris, Ingo Helbig, Maureen E. Hoatlin, Marcin P. Joachimiak
, Simon Jupp
, Kenneth B. Lett, Suzanna E. Lewis, Craig McNamara, Zoë May Pendlington
, Clare Pilgrim
, Tim E. Putman
, Vida Ravanmehr, Justin T. Reese, Erin Rooney Riggs, Sofia M. C. Robb, Paola Roncaglia
, James Seager
, Erik Segerdell
, Morgan Similuk, Andrea L. Storm, Courtney Thaxon, Anne E. Thessen, Julius O. B. Jacobsen, Julie A. McMurry, Tudor Groza
, Sebastian Köhler
, Damian Smedley, Peter N. Robinson
, Christopher J. Mungall, Melissa A. Haendel
, Monica C. Munoz-Torres
, David Osumi-Sutherland
:
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48(Database-Issue): D704-D715 (2020) - 2018
- Irene Papatheodorou
, Nuno A. Fonseca
, Maria Keays
, Y. Amy Tang
, Elisabet Barrera
, Wojciech Bazant, Melissa L. Burke
, Anja Füllgrabe
, Alfonso Muñoz-Pomer Fuentes, Nancy George, Laura Huerta
, Satu Koskinen, Suhaib Mohammed
, Matthew J. Geniza
, Justin Preece, Pankaj Jaiswal
, Andrew F. Jarnuczak
, Wolfgang Huber
, Oliver Stegle
, Juan Antonio Vizcaíno
, Alvis Brazma
, Robert Petryszak
:
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res. 46(Database-Issue): D246-D251 (2018) - Marcela K. Tello-Ruiz, Sushma Naithani
, Joshua C. Stein
, Parul Gupta, Michael Campbell, Andrew Olson, Sharon Wei, Justin Preece, Matthew J. Geniza
, Yinping Jiao, Young Koung Lee, Bo Wang
, Joseph Mulvaney, Kapeel Chougule, Justin Elser, Noor Al-Bader, Sunita Kumari, James Thomason, Vivek Kumar, Daniel M. Bolser
, Guy Naamati
, Electra Tapanari, Nuno A. Fonseca
, Laura Huerta
, Haider Iqbal
, Maria Keays
, Alfonso Muñoz-Pomer Fuentes, Y. Amy Tang
, Antonio Fabregat
, Peter D'Eustachio
, Joel Weiser, Lincoln D. Stein, Robert Petryszak
, Irene Papatheodorou
, Paul J. Kersey
, Patti Lockhart
, Crispin Taylor, Pankaj Jaiswal
, Doreen Ware:
Gramene 2018: unifying comparative genomics and pathway resources for plant research. Nucleic Acids Res. 46(Database-Issue): D1181-D1189 (2018) - J. Pablo Munoz, Rebecca Boger, Scott Dexter, Russanne Low, Justin Li:
Image Recognition of Disease-Carrying Insects: A System for Combating Infectious Diseases Using Image Classification Techniques and Citizen Science. HICSS 2018: 1-10 - 2017
- Gautier Koscielny, Peter An, Denise Carvalho-Silva, Jennifer A. Cham
, Luca Fumis
, Rippa Gasparyan, Samiul Hasan, Nikiforos Karamanis
, Michael Maguire, Eliseo Papa
, Andrea Pierleoni, Miguel Pignatelli
, Theo Platt, Francis Rowland
, Priyanka Wankar, A. Patrícia Bento, Tony Burdett
, Antonio Fabregat
, Simon A. Forbes, Anna Gaulton, Cristina Yenyxe González
, Henning Hermjakob
, Anne Hersey, Steven Jupe
, Senay Kafkas, Maria Keays
, Catherine Leroy, Francisco-Javier Lopez, María P. Magariños
, James Malone, Johanna R. McEntyre, Alfonso Muñoz-Pomer Fuentes
, Claire O'Donovan
, Irene Papatheodorou
, Helen E. Parkinson
, Barbara Palka
, Justin E. Paschall, Robert Petryszak
, Naruemon Pratanwanich
, Sirarat Sarntivijai
, Gary Saunders
, Konstantinos Sidiropoulos
, Thomas Smith, Zbyslaw Sondka, Oliver Stegle, Y. Amy Tang
, Edward Turner, Brendan W. Vaughan, Olga Vrousgou, Xavier Watkins, Maria Jesus Martin, Philippe Sanseau, Jessica Vamathevan, Ewan Birney, Jeffrey Barrett, Ian Dunham:
Open Targets: a platform for therapeutic target identification and validation. Nucleic Acids Res. 45(Database-Issue): D985-D994 (2017) - Sushma Naithani
, Justin Preece, Peter D'Eustachio
, Parul Gupta, Vindhya Amarasinghe, Palitha Dharmawardhana, Guanming Wu, Antonio Fabregat
, Justin Elser, Joel Weiser, Maria Keays
, Alfonso Muñoz-Pomer Fuentes
, Robert Petryszak
, Lincoln D. Stein, Doreen Ware, Pankaj Jaiswal
:
Plant Reactome: a resource for plant pathways and comparative analysis. Nucleic Acids Res. 45(Database-Issue): D1029-D1039 (2017) - 2011
- Monica C. Munoz-Torres, Justin T. Reese, Christopher P. Childers
, Anna K. Bennett
, Jaideep P. Sundaram, Kevin L. Childs
, Juan M. Anzola
, Natalia Milshina, Christine G. Elsik
:
Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera. Nucleic Acids Res. 39(Database-Issue): 658-662 (2011) - 2010
- Kellen Gillespie, Justin Karneeb, Stephen Lee-Urban, Héctor Muñoz-Avila:
Imitating Inscrutable Enemies: Learning from Stochastic Policy Observation, Retrieval and Reuse. ICCBR 2010: 126-140
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