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- David Doty
University of California Davis, CA, USA
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Publication search results
found 143 matches
- 2024
- Austin Luchsinger
, David Doty
, David Soloveichik
:
Brief Announcement: Optimally Encoding Information in Chemical Reaction Networks. PODC 2024: 61-64 - Kim Calabrese, David Doty:
Rate-Independent Continuous Inhibitory Chemical Reaction Networks Are Turing-Universal. UCNC 2024: 104-118 - Kim Calabrese, David Doty:
Rate-independent continuous inhibitory chemical reaction networks are Turing-universal. CoRR abs/2403.07099 (2024) - David Doty, Ben Heckmann:
The computational power of discrete chemical reaction networks with bounded executions. CoRR abs/2405.08649 (2024) - 2023
- Ho-Lin Chen
, David Doty
, Wyatt Reeves
, David Soloveichik
:
Rate-independent Computation in Continuous Chemical Reaction Networks. J. ACM 70(3): 22:1-22:61 (2023) - David Doty, Hunter Fleming, Daniel Hader, Matthew J. Patitz, Lukas A. Vaughan:
Accelerating Self-Assembly of Crisscross Slat Systems. DNA 2023: 7:1-7:23 - Austin Luchsinger, David Doty, David Soloveichik:
Optimal Information Encoding in Chemical Reaction Networks. DNA 2023: 9:1-9:16 - Joshua Petrack, David Soloveichik, David Doty:
Thermodynamically Driven Signal Amplification. DNA 2023: 8:1-8:22 - David Doty
, Paul G. Spirakis
:
2nd Symposium on Algorithmic Foundations of Dynamic Networks, SAND 2023, June 19-21, 2023, Pisa, Italy. LIPIcs 257, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2023, ISBN 978-3-95977-275-4 [contents] - Joshua Petrack, David Soloveichik, David Doty:
Thermodynamically Driven Signal Amplification. CoRR abs/2307.01550 (2023) - Austin Luchsinger, David Doty, David Soloveichik:
Optimal Information Encoding in Chemical Reaction Networks. CoRR abs/2307.01939 (2023) - David Doty, Niels Kornerup
, Austin Luchsinger, Leo Orshansky, David Soloveichik, Damien Woods:
Harvesting Brownian Motion: Zero Energy Computational Sampling. CoRR abs/2309.06957 (2023) - David H. Wolpert, Jan Korbel, Christopher Lynn, Farita Tasnim, Joshua A. Grochow, Gülce Kardes, James B. Aimone
, Vijay Balasubramanian, Eric De Giuli, David Doty, Nahuel Freitas, Matteo Marsili, Thomas E. Ouldridge, Andréa W. Richa, Paul M. Riechers, Édgar Roldán, Brenda M. Rubenstein, Zoltán Toroczkai, Joseph A. Paradiso:
Is stochastic thermodynamics the key to understanding the energy costs of computation? CoRR abs/2311.17166 (2023) - 2022
- David Doty
, Mahsa Eftekhari:
Dynamic Size Counting in Population Protocols. SAND 2022: 13:1-13:18 - David Doty
, Aaron Ong:
Simulating 3-Symbol Turing Machines with SIMD||DNA. SAND 2022: 14:1-14:15 - David Doty, Mahsa Eftekhari:
Dynamic size counting in population protocols. CoRR abs/2202.12864 (2022) - 2021
- Eric E. Severson, David Haley, David Doty
:
Composable computation in discrete chemical reaction networks. Distributed Comput. 34(6): 437-461 (2021) - David Doty, Rudolf Freund, Natasa Jonoska, Jarkko Kari:
Preface. Nat. Comput. 20(4): 637-638 (2021) - Keenan Breik
, Cameron T. Chalk
, David Doty
, David Haley, David Soloveichik
:
Programming Substrate-Independent Kinetic Barriers With Thermodynamic Binding Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 283-295 (2021) - David Doty
, Mahsa Eftekhari
:
A survey of size counting in population protocols. Theor. Comput. Sci. 894: 91-102 (2021) - David Doty
, Eric E. Severson:
Ppsim: A Software Package for Efficiently Simulating and Visualizing Population Protocols. CMSB 2021: 245-253 - David Haley, David Doty
:
Computing Properties of Thermodynamic Binding Networks: An Integer Programming Approach. DNA 2021: 2:1-2:16 - David Doty
, Mahsa Eftekhari, Leszek Gasieniec, Eric E. Severson, Przemyslaw Uznanski, Grzegorz Stachowiak:
A time and space optimal stable population protocol solving exact majority. FOCS 2021: 1044-1055 - Janna Burman, Ho-Lin Chen, Hsueh-Ping Chen, David Doty
, Thomas Nowak, Eric E. Severson, Chuan Xu:
Time-Optimal Self-Stabilizing Leader Election in Population Protocols. PODC 2021: 33-44 - David Doty, Mahsa Eftekhari
, Leszek Gasieniec, Eric E. Severson, Grzegorz Stachowiak
, Przemyslaw Uznanski:
Brief Announcement: A Time and Space Optimal Stable Population Protocol Solving Exact Majority. PODC 2021: 77-80 - David Doty, Eric E. Severson:
ppsim: A software package for efficiently simulating and visualizing population protocols. CoRR abs/2105.04702 (2021) - David Doty, Mahsa Eftekhari
:
A survey of size counting in population protocols. CoRR abs/2105.05408 (2021) - David Doty, Aaron Ong:
Simulating 3-symbol Turing machines with SIMD||DNA. CoRR abs/2105.08559 (2021) - David Doty, Mahsa Eftekhari
, Leszek Gasieniec, Eric E. Severson, Grzegorz Stachowiak, Przemyslaw Uznanski:
A time and space optimal stable population protocol solving exact majority. CoRR abs/2106.10201 (2021) - Ho-Lin Chen, David Doty, David Soloveichik, Wyatt Reeves:
Rate-Independent Computation in Continuous Chemical Reaction Networks. CoRR abs/2107.13681 (2021)
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