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Likely matches
- Cédric Chauve
Simon Fraser University, Department of Mathematics - Cedric Chauvenet
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Publication search results
found 128 matches
- 2024
- Cédric Chauve, Caroline Colijn, Louxin Zhang:
A Vector Representation for Phylogenetic Trees. CoRR abs/2405.07110 (2024) - 2023
- Aniket C. Mane, Mahsa Faizrahnemoon, Tomás Vinar, Brona Brejová
, Cédric Chauve:
PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning. Bioinform. 39(Supplement-1): 288-296 (2023) - 2022
- Aniket C. Mane, Mahsa Faizrahnemoon, Cédric Chauve:
A Mixed Integer Linear Programming Algorithm for Plasmid Binning. RECOMB-CG 2022: 279-292 - 2021
- Daniel Doerr, Cédric Chauve:
Small parsimony for natural genomes in the DCJ-indel model. J. Bioinform. Comput. Biol. 19(6): 2140009:1-2140009:15 (2021) - Cédric Chauve, Marni Mishna, France Paquet-Nadeau:
Refined Upper Bounds on the Size of the Condensed Neighbourhood of Sequences. Stringology 2021: 30-40 - Daniel Doerr, Cédric Chauve:
Small Parsimony for Natural Genomes in the DCJ-Indel Model. CoRR abs/2108.04297 (2021) - 2020
- Aniket C. Mane, Manuel Lafond, Pedro Cipriano Feijão, Cédric Chauve:
The distance and median problems in the single-cut-or-join model with single-gene duplications. Algorithms Mol. Biol. 15(1): 8 (2020) - Haitao Jiang, Hong Liu, Cédric Chauve, Binhai Zhu:
Breakpoint distance and PQ-trees. Inf. Comput. 275: 104584 (2020) - Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen
, Johnathan Wong
, William Hsiao, Cédric Chauve, Leonid Chindelevitch
:
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals. AlCoB 2020: 108-124 - Raphaël Chauvet, Cédric Bousquet
, Agnès Lillo-Le Louët, Ilan Zana, Ilan Ben Kimoun, Marie-Christine Jaulent
:
Classification of the Severity of Adverse Drugs Reactions. MIE 2020: 1227-1228 - Yoann Dufresne
, Chen Sun
, Pierre Marijon
, Dominique Lavenier
, Cédric Chauve, Rayan Chikhi
:
A Graph-Theoretic Barcode Ordering Model for Linked-Reads. WABI 2020: 11:1-11:17 - 2019
- Robert Müller
, Cédric Chauve
:
HyAsP, a greedy tool for plasmids identification. Bioinform. 35(21): 4436-4439 (2019) - Baraa Orabi, Emre Erhan, Brian McConeghy, Stanislav V. Volik, Stephane Le Bihan, Robert Bell, Colin C. Collins, Cédric Chauve, Faraz Hach
:
Alignment-free clustering of UMI tagged DNA molecules. Bioinform. 35(11): 1829-1836 (2019) - Guo Liang Gan, Elijah Willie
, Cédric Chauve, Leonid Chindelevitch
:
Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework. BMC Bioinform. 20-S(20): 637 (2019) - Nina Luhmann
, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler
, Cédric Chauve
:
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1364-1373 (2019) - Hua-Ting Yao
, Cédric Chauve, Mireille Régnier, Yann Ponty:
Exponentially Few RNA Structures are Designable. BCB 2019: 289-298 - Cedric Chauvenet, Cedric Lavenu, Manu Sharma, Andreas Brunschweiler, Mohamed Sedjai:
Software Defined Last Mile Networks. ISPLC 2019: 1-6 - Cédric Chauve, Yann Ponty, Michael Wallner:
Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models. CoRR abs/1905.04971 (2019) - 2018
- Markus Lux
, Ryan Remy Brinkman
, Cédric Chauve
, Adam Laing, Anna Lorenc
, Lucie Abeler-Dörner, Barbara Hammer
:
flowLearn: fast and precise identification and quality checking of cell populations in flow cytometry. Bioinform. 34(13): 2245-2253 (2018) - Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard:
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes. BMC Genom. 19(S2) (2018) - Cédric Chauve, Julien Courtiel, Yann Ponty:
Counting, Generating, Analyzing and Sampling Tree Alignments. Int. J. Found. Comput. Sci. 29(5): 741-767 (2018) - Manuel Lafond
, Cédric Chauve
, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction Using SuperTree and Reconciliation. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1560-1570 (2018) - Nina Luhmann, Cédric Chauve, Jens Stoye
, Roland Wittler:
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 2094-2100 (2018) - Cédric Chauve, Jingxue Feng, Liangliang Wang
:
Detecting Introgression in Anopheles Mosquito Genomes Using a Reconciliation-Based Approach. RECOMB-CG 2018: 163-178 - Aniket C. Mane, Manuel Lafond, Pedro Feijão, Cédric Chauve:
The Rooted SCJ Median with Single Gene Duplications. RECOMB-CG 2018: 28-48 - Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cédric Chauve, Leonid Chindelevitch
:
PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. WABI 2018: 20:1-20:13 - 2017
- Daniel Doerr
, Metin Balaban, Pedro Feijão, Cédric Chauve
:
The gene family-free median of three. Algorithms Mol. Biol. 12(1): 14:1-14:14 (2017) - Benedikt Löwes, Cédric Chauve
, Yann Ponty
, Robert Giegerich:
The BRaliBase dent - a tale of benchmark design and interpretation. Briefings Bioinform. 18(2): 306-311 (2017) - Sean La
, Ehsan Haghshenas, Cédric Chauve
:
LRCstats, a tool for evaluating long reads correction methods. Bioinform. 33(22): 3652-3654 (2017) - Ashok Rajaraman, João Paulo Pereira Zanetti, Ján Manuch, Cédric Chauve
:
Algorithms and Complexity Results for Genome Mapping Problems. IEEE ACM Trans. Comput. Biol. Bioinform. 14(2): 418-430 (2017)
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