• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 11 matches

• 2024
• 
  Jason T. Linzer, Ethan Aminov, Aalim S. Abdullah, Colleen E. Kirkup, Rebeca I. Diaz Ventura, Vinay R. Bijoor, Jiyun Jung, Sophie Huang, Chi Gee Tse, Emily Álvarez Toucet, Hugo P. Onghai, Arghya P. Ghosh, Alex C. Grodzki, Emilee R. Haines, Aditya S. Iyer, Mark K. Khalil, Alexander P. Leong, Michael A. Neuhaus, Joseph Park, Asir Shahid, Matthew Xie, Jan M. Ziembicki, Carlos Simmerling, Maria C. Nagan:
  Accurately Modeling RNA Stem-Loops in an Implicit Solvent Environment. J. Chem. Inf. Model. 64(15): 6092-6104 (2024)
• 2023
• 
  David A. Case, Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro, Negin Forouzesh, Timothy J. Giese, Andreas W. Götz, Holger Gohlke, Saeed Izadi, Koushik Kasavajhala, Mehmet Cagri Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee, Pengfei Li, Jian Liu, Tyler Luchko, Ray Luo, Madushanka Manathunga, Matías R. Machado, Hai Minh Nguyen, Kurt A. O'Hearn, Alexey V. Onufriev, Feng Pan, Sergio Pantano, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo, Akhil Shajan, Jason M. Swails, Junmei Wang, Haixin Wei, Xiongwu Wu, Yongxian Wu, Shi Zhang, Shiji Zhao, Qiang Zhu, Thomas E. Cheatham, Daniel R. Roe, Adrian E. Roitberg, Carlos Simmerling, Darrin M. York, Maria C. Nagan, Kenneth M. Merz Jr.:
  AmberTools. J. Chem. Inf. Model. 63(20): 6183-6191 (2023)
• 
  Darya Stepanenko, Stephanie Budhan, Carlos Simmerling:
  SpikeScape: A Tool for Analyzing Structural Diversity in Experimental Structures of the SARS-CoV-2 Spike Glycoprotein. J. Chem. Inf. Model. 63(4): 1087-1092 (2023)
• 2021
• 
  Lorenzo Casalino, Abigail C. Dommer, Zied Gaieb, Emília P. Barros, Terra Sztain, Surl-Hee Ahn, Anda Trifan, Alexander Brace, Anthony T. Bogetti, Austin Clyde, Heng Ma, Hyungro Lee, Matteo Turilli, Syma Khalid, Lillian T. Chong, Carlos Simmerling, David J. Hardy, Julio D. C. Maia, James C. Phillips, Thorsten Kurth, Abraham C. Stern, Lei Huang, John D. McCalpin, Mahidhar Tatineni, Tom Gibbs, John E. Stone, Shantenu Jha, Arvind Ramanathan, Rommie E. Amaro:
  AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics. Int. J. High Perform. Comput. Appl. 35(5) (2021)
• 2019
• 
  Junjie Zou, Chuan Tian, Carlos Simmerling:
  Blinded prediction of protein-ligand binding affinity using Amber thermodynamic integration for the 2018 D3R grand challenge 4. J. Comput. Aided Mol. Des. 33(12): 1021-1029 (2019)
• 2018
• 
  Michelle Hatch Hummel, Bihua Yu, Carlos Simmerling, Evangelos A. Coutsias:
  Laguerre-Intersection Method for Implicit Solvation. Int. J. Comput. Geom. Appl. 28(1): 1-38 (2018)
• 2017
• 
  Kevin Hauser, Yiqing He, Miguel Garcia-Diaz, Carlos Simmerling, Evangelos A. Coutsias:
  Characterization of Biomolecular Helices and Their Complementarity Using Geometric Analysis. J. Chem. Inf. Model. 57(4): 864-874 (2017)
• 
  Michelle Hatch Hummel, Bihua Yu, Carlos Simmerling, Evangelos A. Coutsias:
  Laguerre-Intersection Method for Implicit Solvation. CoRR abs/1712.06956 (2017)
• 2008
• 
  Kun Song, Viktor Hornak, Carlos De Los Santos, Arthur P. Grollman, Carlos Simmerling:
  Molecular mechanics parameters for the FapydG DNA lesion. J. Comput. Chem. 29(1): 17-23 (2008)
• 2005
• 
  David A. Case, Thomas E. Cheatham III, Tom Darden, Holger Gohlke, Ray Luo, Kenneth M. Merz Jr., Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J. Woods:
  The Amber biomolecular simulation programs. J. Comput. Chem. 26(16): 1668-1688 (2005)
• 2003
• 
  Asim Okur, Bentley Strockbine, Viktor Hornak, Carlos Simmerling:
  Using PC clusters to evaluate the transferability of molecular mechanics force fields for proteins. J. Comput. Chem. 24(1): 21-31 (2003)