- Bernd W. Brandt, Marc J. Bonder, Susan M. Huse, Egija Zaura:
TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage. Nucleic Acids Res. 40(Web-Server-Issue): 82-87 (2012) - Michelle D. Brazas, David S. Yim, Winston Yeung, B. F. Francis Ouellette:
A decade of web server updates at the bioinformatics links directory: 2003-2012. Nucleic Acids Res. 40(Web-Server-Issue): 3-12 (2012) - Alexandre G. de Brevern, Aurélie Bornot, Pierrick Craveur, Catherine Etchebest, Jean-Christophe Gelly:
PredyFlexy: flexibility and local structure prediction from sequence. Nucleic Acids Res. 40(Web-Server-Issue): 317-322 (2012) - Ramona Britto, Olivier Sallou, Olivier Collin, Grégoire Michaux, Michael Primig, Frédéric Chalmel:
GPSy: a cross-species gene prioritization system for conserved biological processes - application in male gamete development. Nucleic Acids Res. 40(Web-Server-Issue): 458-465 (2012) - Marc Bruckskotten, Mario Looso, Richard Reinhardt, Thomas Braun, Thilo Borchardt:
Newt-omics: a comprehensive repository for omics data from the newt Notophthalmus viridescens. Nucleic Acids Res. 40(Database-Issue): 895-900 (2012) - Dechao Bu, Kuntao Yu, Silong Sun, Chaoyong Xie, Geir Skogerbø, Ruoyu Miao, Hui Xiao, Qi Liao, Haitao Luo, Guoguang Zhao, Haitao Zhao, Zhiyong Liu, Changning Liu, Runsheng Chen, Yi Zhao:
NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res. 40(Database-Issue): 210-215 (2012) - Manuel A. Candales, Adrian Duong, Keyar S. Hood, Tony Li, Ryan A. E. Neufeld, Runda Sun, Bonnie A. McNeil, Li Wu, Ashley M. Jarding, Steven Zimmerly:
Database for bacterial group II introns. Nucleic Acids Res. 40(Database-Issue): 187-190 (2012) - Sandrine Caputo, Louisa Benboudjema, Olga Sinilnikova, Etienne Rouleau, Christophe Béroud, Rosette Lidereau:
Description and analysis of genetic variants in French hereditary breast and ovarian cancer families recorded in the UMD-BRCA1/BRCA2 databases. Nucleic Acids Res. 40(Database-Issue): 992-1002 (2012) - Michael Cariaso, Greg Lennon:
SNPedia: a wiki supporting personal genome annotation, interpretation and analysis. Nucleic Acids Res. 40(Database-Issue): 1308-1312 (2012) - Ron Caspi, Tomer Altman, Kate Dreher, Carol A. Fulcher, Pallavi Subhraveti, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Lukas A. Mueller, Quang Ong, Suzanne M. Paley, Anuradha Pujar, Alexander Glennon Shearer, Michael Travers, Deepika Weerasinghe, Peifen Zhang, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res. 40(Database-Issue): 742-753 (2012) - Petr Cech, Daniel Svozil, David Hoksza:
SETTER: web server for RNA structure comparison. Nucleic Acids Res. 40(Web-Server-Issue): 42-48 (2012) - Anna Chailyan, Anna Tramontano, Paolo Marcatili:
A database of immunoglobulins with integrated tools: DIGIT. Nucleic Acids Res. 40(Database-Issue): 1230-1234 (2012) - Abhijit Chakraborty, Sudeshna Ghosh, Garisha Chowdhary, Ujjwal Maulik, Saikat Chakrabarti:
DBETH: A Database of Bacterial Exotoxins for Human. Nucleic Acids Res. 40(Database-Issue): 615-620 (2012) - Abhijit Chakraborty, Sapan Mandloi, Christopher J. Lanczycki, Anna R. Panchenko, Saikat Chakrabarti:
SPEER-SERVER: a web server for prediction of protein specificity determining sites. Nucleic Acids Res. 40(Web-Server-Issue): 242-248 (2012) - Patricia P. Chan, Andrew D. Holmes, Andrew M. Smith, Danny Tran, Todd M. Lowe:
The UCSC Archaeal Genome Browser: 2012 update. Nucleic Acids Res. 40(Database-Issue): 646-652 (2012) - Darby Tien-Hao Chang, Tsung-Ju Yao, Chen-Yu Fan, Chih-Yun Chiang, Yi-Han Bai:
AH-DB: collecting protein structure pairs before and after binding. Nucleic Acids Res. 40(Database-Issue): 472-478 (2012) - Wei-Hua Chen, Pablo Minguez, Martin J. Lercher, Peer Bork:
OGEE: an online gene essentiality database. Nucleic Acids Res. 40(Database-Issue): 901-906 (2012) - Yao Chi Chen, Jon D. Wright, Carmay Lim:
DR_bind: a web server for predicting DNA-binding residues from the protein structure based on electrostatics, evolution and geometry. Nucleic Acids Res. 40(Web-Server-Issue): 249-256 (2012) - Lihong Chen, Zhaohui Xiong, Lilian Sun, Jian Yang, Qi Jin:
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res. 40(Database-Issue): 641-645 (2012) - Dijun Chen, Chunhui Yuan, Jian Zhang, Zhao Zhang, Lin Bai, Yijun Meng, Ling-Ling Chen, Ming Chen:
PlantNATsDB: a comprehensive database of plant natural antisense transcripts. Nucleic Acids Res. 40(Database-Issue): 1187-1193 (2012) - Yu-Chang Cheng, Fang-Chih Hsiao, Erh-Chan Yeh, Wan-Jia Lin, Cheng-Yang Louis Tang, Huan-Chin Tseng, Hsing-Tsung Wu, Chuan-Kun Liu, Chih-Cheng Chen, Yuan-Tsong Chen, Adam Yao:
VarioWatch: providing large-scale and comprehensive annotations on human genomic variants in the next generation sequencing era. Nucleic Acids Res. 40(Web-Server-Issue): 76-81 (2012) - J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Robert S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong:
Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res. 40(Database-Issue): 700-705 (2012) - Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Chien-Yu Chen, Darby Tien-Hao Chang:
DBD2BS: connecting a DNA-binding protein with its binding sites. Nucleic Acids Res. 40(Web-Server-Issue): 173-179 (2012) - Karl J. Clark, David P. Argue, Andrew M. Petzold, Stephen C. Ekker:
zfishbook: connecting you to a world of zebrafish revertible mutants. Nucleic Acids Res. 40(Database-Issue): 907-911 (2012) - James H. Collier, Arthur M. Lesk, Maria Garcia de la Banda, Arun Siddharth Konagurthu:
Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank. Nucleic Acids Res. 40(Web-Server-Issue): 334-339 (2012) - Sergio Contrino, Richard N. Smith, Daniela Butano, Adrian Carr, Fengyuan Hu, Rachel Lyne, Kim Rutherford, Alex Kalderimis, Julie M. Sullivan, Seth Carbon, Ellen T. Kephart, Paul Lloyd, E. O. Stinson, Nicole L. Washington, Marc D. Perry, Peter Ruzanov, Zheng Zha, Suzanna E. Lewis, Lincoln D. Stein, Gos Micklem:
modMine: flexible access to modENCODE data. Nucleic Acids Res. 40(Database-Issue): 1082-1088 (2012) - Mark J. Cowley, Mark Pinese, Karin S. Kassahn, Nic Waddell, John V. Pearson, Sean M. Grimmond, Andrew V. Biankin, Sampsa Hautaniemi, Jianmin Wu:
PINA v2.0: mining interactome modules. Nucleic Acids Res. 40(Database-Issue): 862-865 (2012) - Joseph A. Cruz, Yifeng Liu, Yongjie Liang, You Zhou, Michael Wilson, Jonathan J. Dennis, Paul Stothard, Gary H. Van Domselaar, David S. Wishart:
BacMap: an up-to-date electronic atlas of annotated bacterial genomes. Nucleic Acids Res. 40(Database-Issue): 599-604 (2012) - Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin:
HotRegion: a database of predicted hot spot clusters. Nucleic Acids Res. 40(Database-Issue): 829-833 (2012) - Aedín C. Culhane, Markus S. Schröder, Razvan Sultana, Shaita C. Picard, Enzo N. Martinelli, Caroline Kelly, Benjamin Haibe-Kains, Misha Kapushesky, Anne-Alyssa St Pierre, William Flahive, Kermshlise C. Picard, Daniel Gusenleitner, Gerald Papenhausen, Niall O'Connor, Mick Correll, John Quackenbush:
GeneSigDB: a manually curated database and resource for analysis of gene expression signatures. Nucleic Acids Res. 40(Database-Issue): 1060-1066 (2012)