- Dapeng Wang, Yan Xia, Xinna Li, Lixia Hou, Jun Yu:
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. Nucleic Acids Res. 41(Database-Issue): 1199-1205 (2013) - 2012
- Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman:
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. Nucleic Acids Res. 40(Database-Issue): 653-659 (2012) - David M. Goodstein, Shengqiang Shu, Russell Howson, Rochak Neupane, Richard D. Hayes, Joni Fazo, Therese Mitros, William Dirks, Uffe Hellsten, Nicholas H. Putnam, Daniel S. Rokhsar:
Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40(Database-Issue): 1178-1186 (2012) - Jonathan G. Lees, Corin Yeats, James Richard Perkins, Ian Sillitoe, Robert Rentzsch, Benoit H. Dessailly, Christine A. Orengo:
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis. Nucleic Acids Res. 40(Database-Issue): 465-471 (2012) - Jun Li, Xinbin Dai, Tingsong Liu, Patrick Xuechun Zhao:
LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes. Nucleic Acids Res. 40(Database-Issue): 1221-1229 (2012) - 2011
- Lee S. Katz, Jay C. Humphrey, Andrew B. Conley, Viswateja Nelakuditi, Andrey Kislyuk, Sonia Agrawal, Pushkala Jayaraman, Brian H. Harcourt, Melissa A. Olsen-Rasmussen, Michael Frace, Nitya V. Sharma, Leonard W. Mayer, I King Jordan:
Neisseria Base: a comparative genomics database for Neisseria meningitidis. Database J. Biol. Databases Curation 2011 (2011) - Olivier Arnaiz, Linda Sperling:
ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia. Nucleic Acids Res. 39(Database-Issue): 632-636 (2011) - Bongsoo Park, Jongsun Park, Kyeong-Chae Cheong, Jaeyoung Choi, Kyongyong Jung, Donghan Kim, Yong-Hwan Lee, Todd J. Ward, Kerry O'Donnell, David M. Geiser, Seogchan Kang:
Cyber infrastructure for Fusarium: three integrated platforms supporting strain identification, phylogenetics, comparative genomics and knowledge sharing. Nucleic Acids Res. 39(Database-Issue): 640-646 (2011) - Mathieu Rouard, Valentin Guignon, Christelle Aluome, Marie-Angélique Laporte, Gaëtan Droc, Christian Walde, Christian M. Zmasek, Christophe Périn, Matthieu G. Conte:
GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Res. 39(Database-Issue): 1095-1102 (2011) - Geoffrey L. Winsor, David K. W. Lam, Leanne Fleming, Raymond Lo, Matthew D. Whiteside, Nancy Y. Yu, Robert E. W. Hancock, Fiona S. L. Brinkman:
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes. Nucleic Acids Res. 39(Database-Issue): 596-600 (2011) - 2010
- Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock:
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. Nucleic Acids Res. 38(Database-Issue): 420-427 (2010) - Paramvir S. Dehal, Marcin P. Joachimiak, Morgan N. Price, John T. Bates, Jason K. Baumohl, Dylan Chivian, Greg D. Friedland, Katherine H. Huang, Keith Keller, Pavel S. Novichkov, Inna Dubchak, Eric J. Alm, Adam P. Arkin:
MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38(Database-Issue): 396-400 (2010) - Motohiro Mihara, Takeshi Itoh, Takeshi Izawa:
SALAD database: a motif-based database of protein annotations for plant comparative genomics. Nucleic Acids Res. 38(Database-Issue): 835-842 (2010) - 2009
- David Vallenet, Stefan Engelen, Damien Mornico, Stéphane Cruveiller, Ludovic Fleury, Aurélie Lajus, Zoé Rouy, David Roche, Gregory Salvignol, Claude Scarpelli, Claudine Médigue:
MicroScope: a platform for microbial genome annotation and comparative genomics. Database J. Biol. Databases Curation 2009 (2009) - Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière:
Databases of homologous gene families for comparative genomics. BMC Bioinform. 10(S-6) (2009) - Johannes Klein, Richard Münch, Ilona Biegler, Isam Haddad, Ida Retter, Dieter Jahn:
Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). Nucleic Acids Res. 37(Database-Issue): 494-498 (2009) - John C. Martin, Sahar Abubucker, Todd Wylie, Yong Yin, Zhengyuan Wang, Makedonka Dautova Mitreva:
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics. Nucleic Acids Res. 37(Database-Issue): 571-578 (2009) - Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Martin Madera, Cyrus Chothia, Julian Gough:
SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny. Nucleic Acids Res. 37(Database-Issue): 380-386 (2009) - 2008
- Hélène Chiapello, Annie Gendrault, Christophe Caron, Jérome Blum, Marie-Agnès Petit, Meriem El Karoui:
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. BMC Bioinform. 9 (2008) - Roy R. Chaudhuri, Nicholas J. Loman, Lori A. S. Snyder, Christopher M. Bailey, Dov J. Stekel, Mark J. Pallen:
xBASE2: a comprehensive resource for comparative bacterial genomics. Nucleic Acids Res. 36(Database-Issue): 543-546 (2008) - Matthieu G. Conte, S. Gaillard, N. Lanau, Mathieu Rouard, Christophe Périn:
GreenPhylDB: a database for plant comparative genomics. Nucleic Acids Res. 36(Database-Issue): 991-998 (2008) - Jon Duvick, Ann Fu, Usha Muppirala, Mukul Sabharwal, Matthew D. Wilkerson, Carolyn J. Lawrence, Carol Lushbough, Volker Brendel:
PlantGDB: a resource for comparative plant genomics. Nucleic Acids Res. 36(Database-Issue): 959-965 (2008) - Yong Seok Lee, Jeongsu Oh, Young Uk Kim, Namchul Kim, Sungjin Yang, Ui Wook Hwang:
Mitome: dynamic and interactive database for comparative mitochondrial genomics in metazoan animals. Nucleic Acids Res. 36(Database-Issue): 938-942 (2008) - Chengzhi Liang, Pankaj Jaiswal, Claire Hebbard, Shuly Avraham, Edward S. Buckler, Terry M. Casstevens, Bonnie L. Hurwitz, Susan McCouch, Junjian Ni, Anuradha Pujar, Dean Ravenscroft, Liya Ren, William Spooner, Isaak Y. Tecle, Jim Thomason, Chih-Wei Tung, Xuehong Wei, Immanuel Yap, Ken Youens-Clark, Doreen Ware, Lincoln Stein:
Gramene: a growing plant comparative genomics resource. Nucleic Acids Res. 36(Database-Issue): 947-953 (2008) - Jongsun Park, Bongsoo Park, Kyongyong Jung, Suwang Jang, Kwangyul Yu, Jaeyoung Choi, Sunghyung Kong, Jaejin Park, Seryun Kim, Hyojeong Kim, Soonok Kim, Jihyun F. Kim, Jaime E. Blair, Kwangwon Lee, Seogchan Kang, Yong-Hwan Lee:
CFGP: a web-based, comparative fungal genomics platform. Nucleic Acids Res. 36(Database-Issue): 562-571 (2008) - P. Kerr Wall, James H. Leebens-Mack, Kai F. Müller, Dawn Field, Naomi S. Altman, Claude W. dePamphilis:
PlantTribes: a gene and gene family resource for comparative genomics in plants. Nucleic Acids Res. 36(Database-Issue): 970-976 (2008) - Tun-Wen Pai, Meng-Chang Hsiao, Chien-Ming Chen, Wen-Shyong Tzou, Ron-Shan Chen:
An SSR Comparative Genomics Database and Its Applications. CISIS 2008: 661-666 - 2007
- Florian Iragne:
Prédiction de réseaux d'interactions biomoléculaires à partir de données de la génomique comparée. (Prediction of biomolecular interaction networks from comparative genomics data). University of Bordeaux, France, 2007 - Christoph Dieterich, M. W. Franz, Martin Vingron:
Developments in CORG: a gene-centric comparative genomics resource. Nucleic Acids Res. 35(Database-Issue): 32-35 (2007) - Namshin Kim, Alexander V. Alekseyenko, Meenakshi Roy, Christopher J. Lee:
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic Acids Res. 35(Database-Issue): 93-98 (2007)