- Clara Pizzuti, Simona E. Rombo:
A Coclustering Approach for Mining Large Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 717-730 (2012) - Aleksandar Poleksic
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On Complexity of Protein Structure Alignment Problem under Distance Constraint. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 511-516 (2012) - Xiaoning Qian, Edward R. Dougherty:
Intervention in Gene Regulatory Networks via Phenotypically Constrained Control Policies Based on Long-Run Behavior. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 123-136 (2012) - José Ramón Quevedo, Antonio Bahamonde, Miguel Pérez-Enciso, Oscar Luaces:
Disease Liability Prediction from Large Scale Genotyping Data Using Classifiers with a Reject Option. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 88-97 (2012) - Matteo Re, Marco Mesiti, Giorgio Valentini:
A Fast Ranking Algorithm for Predicting Gene Functions in Biomolecular Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1812-1818 (2012) - Richard Röttger, Ulrich Rückert, Jan Taubert, Jan Baumbach:
How Little Do We Actually Know? On the Size of Gene Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1293-1300 (2012) - Marie-France Sagot:
EIC Editorial. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1553-1557 (2012) - Francesco Sambo, Marco Antonio Montes de Oca, Barbara Di Camillo, Gianna Toffolo, Thomas Stützle:
MORE: Mixed Optimization for Reverse Engineering - An Application to Modeling Biological Networks Response via Sparse Systems of Nonlinear Differential Equations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1459-1471 (2012) - Khachik Sargsyan, Cosmin Safta, Bert J. Debusschere, Habib N. Najm:
Multiparameter Spectral Representation of Noise-Induced Competence in Bacillus Subtilis. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1709-1723 (2012) - Soumi Sengupta, Sanghamitra Bandyopadhyay:
De Novo Design of Potential RecA Inhibitors Using MultiObjective Optimization. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1139-1154 (2012) - Debarka Sengupta, Ujjwal Maulik, Sanghamitra Bandyopadhyay:
Weighted Markov Chain Based Aggregation of Biomolecule Orderings. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 924-933 (2012) - Oliver Serang, William Stafford Noble:
Faster Mass Spectrometry-Based Protein Inference: Junction Trees Are More Efficient than Sampling and Marginalization by Enumeration. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 809-817 (2012) - Alok Sharma, Seiya Imoto, Satoru Miyano:
A Top-r Feature Selection Algorithm for Microarray Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 754-764 (2012) - Andreas Spillner, Binh T. Nguyen, Vincent Moulton:
Constructing and Drawing Regular Planar Split Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 395-407 (2012) - Georgina Stegmayer, Diego H. Milone, Laura Kamenetzky, Mariana G. Lopez, Fernando Carrari:
A Biologically Inspired Validity Measure for Comparison of Clustering Methods over Metabolic Data Sets. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 706-716 (2012) - Sascha Steinbiss, Stefan Kurtz:
A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 345-357 (2012) - Chien-Hao Su, Tse-Yi Wang, Ming-Tsung Hsu, Francis Cheng-Hsuan Weng, Cheng-Yan Kao, Daryi Wang, Huai-Kuang Tsai:
The Impact of Normalization and Phylogenetic Information on Estimating the Distance for Metagenomes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 619-628 (2012) - Yanni Sun, Jeremy Buhler, Cheng Yuan:
Designing Filters for Fast-Known NcRNA Identification. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 774-787 (2012) - Jianyong Sun, Jonathan M. Garibaldi, Charlie Hodgman:
Parameter Estimation Using Metaheuristics in Systems Biology: A Comprehensive Review. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 185-202 (2012) - Jianyong Sun, Jonathan M. Garibaldi, Kim Kenobi:
Robust Bayesian Clustering for Replicated Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1504-1514 (2012) - Hong Sun, Ahmet Sacan, Hakan Ferhatosmanoglu, Yusu Wang:
Smolign: A Spatial Motifs-Based Protein Multiple Structural Alignment Method. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 249-261 (2012) - Krister M. Swenson, Eric C. H. Chen, Nicholas D. Pattengale, David Sankoff:
The Kernel of Maximum Agreement Subtrees. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1023-1031 (2012) - Yang Tang, Zidong Wang, Huijun Gao, Stephen Swift, Jürgen Kurths:
A Constrained Evolutionary Computation Method for Detecting Controlling Regions of Cortical Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1569-1581 (2012) - José Salavert Torres, Ignacio Blanquer Espert, Andrés Tomás Dominguez, Vicente Hernández, Ignacio Medina, Joaquín Tárraga, Joaquín Dopazo:
Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1245-1256 (2012) - Richard Tzong-Han Tsai:
Improving Protein-Protein Interaction Pair Ranking with an Integrated Global Association Score. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1690-1695 (2012) - Bane Vasic, Vida Ravanmehr, Anantha Raman Krishnan:
An Information Theoretic Approach to Constructing Robust Boolean Gene Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 52-65 (2012) - Lin Wan, Fengzhu Sun:
CEDER: Accurate Detection of Differentially Expressed Genes by Combining Significance of Exons Using RNA-Seq. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1281-1292 (2012) - Biing-Feng Wang:
Output-Sensitive Algorithms for Finding the Nested Common Intervals of Two General Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 548-559 (2012) - Chong Wang, Peter Beyerlein, Heike Pospisil, Antje Krause, Chris D. Nugent, Werner Dubitzky:
An Efficient Method for Modeling Kinetic Behavior of Channel Proteins in Cardiomyocytes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 40-51 (2012) - Jianxin Wang, Yuannan Huang, Fang-Xiang Wu, Yi Pan:
Symmetry Compression Method for Discovering Network Motifs. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1776-1789 (2012)
