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Larry Croft , Damian Szklarczyk , Lars Juhl Jensen , Jan Gorodkin : Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs. BMC Syst. Biol. 6 : 90 (2012 )share record
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Scott B. Crown , Woo Ahn , Maciek R. Antoniewicz : Rational design of 13 C-labeling experiments for metabolic flux analysis in mammalian cells. BMC Syst. Biol. 6 : 43 (2012 )export record
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journals/bmcsb/CruzHDWPHDG12 share record
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Ana Luisa B. Cruz , Marit Hebly , Giang-Huong Duong , Sebastian A. Wahl , Jack T. Pronk , Joseph J. Heijnen , Pascale A. S. Daran-Lapujade , Walter M. van Gulik : Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics? BMC Syst. Biol. 6 : 151 (2012 )export record
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journals/bmcsb/DAuriaDGKWCSLPH12 share record
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Kevin M. D'Auria , Gina M. Donato , Mary C. Gray , Glynis L. Kolling , Cirle A. Warren , Lauren M. Cave , Michael D. Solga , Joanne A. Lannigan , Jason A. Papin , Erik L. Hewlett : Systems analysis of the transcriptional response of human ileocecal epithelial cells to Clostridium difficile toxins and effects on cell cycle control. BMC Syst. Biol. 6 : 2 (2012 )share record
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Jishnu Das , Haiyuan Yu : HINT: High-quality protein interactomes and their applications in understanding human disease. BMC Syst. Biol. 6 : 92 (2012 )share record
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Chao-Yi Dong , Kwang-Hyun Cho : An optimally evolved connective ratio of neural networks that maximizes the occurrence of synchronized bursting behavior. BMC Syst. Biol. 6 : 23 (2012 )export record
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Brian Drawert , Stefan Engblom , Andreas Hellander : URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries. BMC Syst. Biol. 6 : 76 (2012 )export record
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Magbubah Essack , Cameron MacPherson , Sebastian Schmeier , Vladimir B. Bajic : Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model. BMC Syst. Biol. 6 : 135 (2012 )export record
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Giuseppe Facchetti , Mattia Zampieri , Claudio Altafini : Predicting and characterizing selective multiple drug treatments for metabolic diseases and cancer. BMC Syst. Biol. 6 : 115 (2012 )export record
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ShengJun Fan , Qiang Geng , Zhen-Yu Pan , Xin Li , Lu Tie , Yan Pan , Xuejun Li : Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach. BMC Syst. Biol. 6 : 152 (2012 )share record
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Xueyang Feng , You Xu , Yixin Chen , Yinjie J. Tang : MicrobesFlux: a web platform for drafting metabolic models from the KEGG database. BMC Syst. Biol. 6 : 94 (2012 )export record
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journals/bmcsb/FloresLYSRLVLM12 share record
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Ricardo J. Flores , Yiting Li , Alexander Yu , Jianhe Shen , Pulivarthi H. Rao , Serrine S. Lau , Marina Vannucci , Ching C. Lau , Tsz-Kwong Man : A systems biology approach reveals common metastatic pathways in osteosarcoma. BMC Syst. Biol. 6 : 50 (2012 )export record
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journals/bmcsb/FuTDWCLZGC12 share record
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Jihong Fu , Wentao Tang , Peng Du , Guanghui Wang , Wei Chen , Jingming Li , Yunxiang Zhu , Jun Gao , Long Cui : Identifying MicroRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis. BMC Syst. Biol. 6 : 68 (2012 )export record
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journals/bmcsb/FujitaSKSPM12 share record
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André Fujita , Patricia Severino , Kaname Kojima , João Ricardo Sato , Alexandre Galvão Patriota , Satoru Miyano : Functional clustering of time series gene expression data by Granger causality. BMC Syst. Biol. 6 : 137 (2012 )export record
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journals/bmcsb/GidvaniSLDMDI12 share record
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Rohan D. Gidvani , Peter Sudmant , Grace Li , Lance F. DaSilva , Brendan J. McConkey , Bernard P. Duncker , Brian P. Ingalls : A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations. BMC Syst. Biol. 6 : 78 (2012 )export record
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Pedro Gonnet , Sotiris Dimopoulos , Lukas Widmer , Jörg Stelling : A specialized ODE integrator for the efficient computation of parameter sensitivities. BMC Syst. Biol. 6 : 46 (2012 )export record
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journals/bmcsb/GrieneisenSHM12 share record
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Verônica A. Grieneisen , Ben Scheres , Paulien Hogeweg , Athanasius F. M. Marée : Morphogengineering roots: comparing mechanisms of morphogen gradient formation. BMC Syst. Biol. 6 : 37 (2012 )share record
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Zuguang Gu , Jialin Liu , Kunming Cao , Junfeng Zhang , Jin Wang : Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes. BMC Syst. Biol. 6 : 56 (2012 )share record
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Zuguang Gu , Chenyu Zhang , Jin Wang : Gene regulation is governed by a core network in hepatocellular carcinoma. BMC Syst. Biol. 6 : 32 (2012 )share record
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Dapeng Hao , Cong Ren , Chuanxing Li : Revisiting the variation of clustering coefficient of biological networks suggests new modular structure. BMC Syst. Biol. 6 : 34 (2012 )export record
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Anne-Claire Haury , Fantine Mordelet , Paola Vera-Licona , Jean-Philippe Vert : TIGRESS: Trustful Inference of Gene REgulation using Stability Selection. BMC Syst. Biol. 6 : 145 (2012 )export record
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journals/bmcsb/HeavnerSBMW12 share record
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Benjamin D. Heavner , Kieran Smallbone , Brandon Barker , Pedro Mendes , Larry P. Walker : Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network. BMC Syst. Biol. 6 : 55 (2012 )export record
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journals/bmcsb/HelikarKMBRMWSLR12 share record
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Tomás Helikar , Bryan M. Kowal , Sean McClenathan , Mitchell Bruckner , Thaine W. Rowley , Alex Madrahimov , Benjamin Wicks , Manish Shrestha , Kahani Limbu , Jim A. Rogers : The Cell Collective: Toward an open and collaborative approach to systems biology. BMC Syst. Biol. 6 : 96 (2012 )export record
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Iain Hepburn , Weiliang Chen , Stefan Wils , Erik De Schutter : STEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologies. BMC Syst. Biol. 6 : 36 (2012 )share record
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Milan van Hoek , Roeland Merks : Redox balance is key to explaining full vs. partial switching to low-yield metabolism. BMC Syst. Biol. 6 : 22 (2012 )export record
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journals/bmcsb/HongKKKSCS12 share record
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Ji-Young Hong , Geun-Hong Kim , Jun-Woo Kim , Soon-Sung Kwon , Eisuke F. Sato , Kwang-Hyun Cho , Eun Bo Shim : Computational modeling of apoptotic signaling pathways induced by cisplatin. BMC Syst. Biol. 6 : 122 (2012 )export record
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Changki Hong , Minho Lee , Dongsup Kim , Dong San Kim , Kwang-Hyun Cho , Insik Shin : A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network. BMC Syst. Biol. 6 : 129 (2012 )share record
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Tian Hong , Jianhua Xing , Liwu Li , John J. Tyson : A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells. BMC Syst. Biol. 6 : 66 (2012 )export record
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journals/bmcsb/IngkasuwanNPTBMCTC12 share record
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Papapit Ingkasuwan , Supatcharee Netrphan , Sukon Prasitwattanaseree , Morakot Tanticharoen , Sakarindr Bhumiratana , Asawin Meechai , Jeerayut Chaijaruwanich , Hideki Takahashi , Supapon Cheevadhanarak : Inferring transcriptional gene regulation network of starch metabolism in Arabidopsis thaliana leaves using graphical Gaussian model. BMC Syst. Biol. 6 : 100 (2012 )share record
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Gengjie Jia , Gregory Stephanopoulos , Rudiyanto Gunawan : Incremental parameter estimation of kinetic metabolic network models. BMC Syst. Biol. 6 : 142 (2012 )