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Cédric Beaulac , Sidi Wu , Erin Gibson , Michelle F. Miranda , Jiguo Cao , Leno Rocha , Mirza Faisal Beg , Farouk S. Nathoo : Neuroimaging feature extraction using a neural network classifier for imaging genetics. BMC Bioinform. 24 (1 ) : 271 (2023 )export record
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journals/bmcbi/BehdennaCHGAAN23 share record
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Abdelkader Behdenna , Maximilien Colange , Julien Haziza , Aryo Gema , Guillaume Appé , Chloé-Agathe Azencott , Akpéli Nordor : pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods. BMC Bioinform. 24 (1 ) : 459 (2023 )export record
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Babak Beikzadeh : Immunoinformatics design of multi-epitope vaccine using OmpA, OmpD and enterotoxin against non-typhoidal salmonellosis. BMC Bioinform. 24 (1 ) : 63 (2023 )export record
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Shaima Belhechmi , Gwénaël Le Teuff , Riccardo De Bin , Federico Rotolo , Stefan Michiels : Favoring the hierarchical constraint in penalized survival models for randomized trials in precision medicine. BMC Bioinform. 24 (1 ) : 96 (2023 )export record
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Matthias van den Belt , Cameron L. M. Gilchrist , Thomas J. Booth , Yit-Heng Chooi , Marnix H. Medema , Mohammad Alanjary : CAGECAT: The CompArative GEne Cluster Analysis Toolbox for rapid search and visualisation of homologous gene clusters. BMC Bioinform. 24 (1 ) : 181 (2023 )export record
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Antonio Benítez-Hidalgo , José Francisco Aldana Montes , Ismael Navas-Delgado , María del Mar Roldán García : SALON ontology for the formal description of sequence alignments. BMC Bioinform. 24 (1 ) : 69 (2023 )export record
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Sven Berres , Jörg Gromoll , Marius Wöste , Sarah Sandmann , Sandra Laurentino : OGRE: calculate, visualize, and analyze overlap between genomic input regions and public annotations. BMC Bioinform. 24 (1 ) : 300 (2023 )export record
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Luigi Di Biasi , Fabiola De Marco , Alessia Auriemma Citarella , Modesto Castrillón Santana , Paola Barra , Genoveffa Tortora : Refactoring and performance analysis of the main CNN architectures: using false negative rate minimization to solve the clinical images melanoma detection problem. BMC Bioinform. 24 (1 ) : 386 (2023 )export record
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Oguz C. Binatli , Mehmet Gönen : MOKPE: drug-target interaction prediction via manifold optimization based kernel preserving embedding. BMC Bioinform. 24 (1 ) : 276 (2023 )export record
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Thomas Binet , Séverine Padiolleau-Lefèvre , Stéphane Octave , Bérangère Avalle , Irene Maffucci : Comparative Study of Single-stranded Oligonucleotides Secondary Structure Prediction Tools. BMC Bioinform. 24 (1 ) : 422 (2023 )export record
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journals/bmcbi/BoeykensBPB23 share record
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Fréderique Boeykens , Sofie F. M. Bhatti , Luc Peelman , Bart J. G. Broeckx : VariantscanR: an R-package as a clinical tool for variant filtering of known phenotype-associated variants in domestic animals. BMC Bioinform. 24 (1 ) : 305 (2023 )export record
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journals/bmcbi/BokharaeianDD23 share record
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Behrouz Bokharaeian , Mohammad Dehghani , Alberto Díaz : Automatic extraction of ranked SNP-phenotype associations from text using a BERT-LSTM-based method. BMC Bioinform. 24 (1 ) : 144 (2023 )share record
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Richard Border , Osman Asif Malik : rBahadur: efficient simulation of structured high-dimensional genotype data with applications to assortative mating. BMC Bioinform. 24 (1 ) : 314 (2023 )export record
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Aritra Bose , Myson C. Burch , Agniva Chowdhury , Peristera Paschou , Petros Drineas : Structure-informed clustering for population stratification in association studies. BMC Bioinform. 24 (1 ) : 411 (2023 )share record
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Samuel Boyd , Chad Slawson , Jeffrey A. Thompson : AMEND: active module identification using experimental data and network diffusion. BMC Bioinform. 24 (1 ) : 277 (2023 )export record
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William Breslin , Doan Pham : Machine learning and drug discovery for neglected tropical diseases. BMC Bioinform. 24 (1 ) : 165 (2023 )export record
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Mitja Briscik , Marie-Agnès Dillies , Sébastien Déjean : Improvement of variables interpretability in kernel PCA. BMC Bioinform. 24 (1 ) : 282 (2023 )export record
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Scott D. Brown , Lisa Dreolini , Jessica F. Wilson , Miruna Balasundaram , Robert A. Holt : Complete sequence verification of plasmid DNA using the Oxford Nanopore Technologies' MinION device. BMC Bioinform. 24 (1 ) : 116 (2023 )export record
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Tomás Bruna , Heng Li , Joseph Guhlin , Daniel Honsel , Steffen Herbold , Mario Stanke , Natalia Nenasheva , Matthis Ebel , Lars Gabriel , Katharina Jasmin Hoff : Galba: genome annotation with miniprot and AUGUSTUS. BMC Bioinform. 24 (1 ) : 327 (2023 )export record
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Léo Bürgy , Martin Weigert , Georgios Hatzopoulos , Matthias Minder , Adrien Journé , Sahand Jamal Rahi , Pierre Gonczy : CenFind: a deep-learning pipeline for efficient centriole detection in microscopy datasets. BMC Bioinform. 24 (1 ) : 120 (2023 )export record
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Shelvasha Burkes-Patton , Elizabeth A. Cooper , Jessica Schlueter : RepBox: a toolbox for the identification of repetitive elements. BMC Bioinform. 24 (1 ) : 317 (2023 )export record
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Adrià Caballé-Mestres , Antoni Berenguer-Llergo , Camille Stephan-Otto Attolini : Roastgsa: a comparison of rotation-based scores for gene set enrichment analysis. BMC Bioinform. 24 (1 ) : 408 (2023 )export record
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Pengli Cai , Sheng Liu , Dachuan Zhang , Huadong Xing , Mengying Han , Dongliang Liu , Linlin Gong , Qian-Nan Hu : SynBioTools: a one-stop facility for searching and selecting synthetic biology tools. BMC Bioinform. 24 (1 ) : 152 (2023 )share record
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Jitong Cai , Jianan Zhan , Dan E. Arking , Joel S. Bader : Priors, population sizes, and power in genome-wide hypothesis tests. BMC Bioinform. 24 (1 ) : 170 (2023 )share record
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Malu Luz Calle , Meritxell Pujolassos , Antonio Susín : coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies. BMC Bioinform. 24 (1 ) : 82 (2023 )export record
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Christiam Camacho , Grzegorz M. Boratyn , Victor Joukov , Roberto Vera Alvarez , Thomas L. Madden : ElasticBLAST: accelerating sequence search via cloud computing. BMC Bioinform. 24 (1 ) : 117 (2023 )export record
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Marco Alvarado Cano , Ginger Tsueng , Xinghua Zhou , Jiwen Xin , Laura D. Hughes , Julia Mullen , Andrew I. Su , Chunlei Wu : Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data. BMC Bioinform. 24 (1 ) : 159 (2023 )share record
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Shenghao Cao , Mengtian Li , Lei M. Li : RegCloser: a robust regression approach to closing genome gaps. BMC Bioinform. 24 (1 ) : 249 (2023 )share record
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Chao Cao , Shuhong Yang , Mengli Li , Chungui Li : CircSSNN: circRNA-binding site prediction via sequence self-attention neural networks with pre-normalization. BMC Bioinform. 24 (1 ) : 220 (2023 )export record
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Mathias Cardner , Francesco Marass , Erika Gedvilaite , Julie L. Yang , Dana W. Y. Tsui , Niko Beerenwinkel : Predicting tumour content of liquid biopsies from cell-free DNA. BMC Bioinform. 24 (1 ) : 368 (2023 )