2023 share record
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Yongbing Zhao : TFSyntax: a database of transcription factors binding syntax in mammalian genomes. Nucleic Acids Res. 51 (D1 ) : 306-314 (2023 )2021 share record
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Sebastian Palacios : Artificial neural network and precision genome engineering frameworks for genetic system engineering in mammalian cells. Massachusetts Institute of Technology, USA, 2021 export record
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journals/bioinformatics/PirogovPBH21 share record
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Anton Pirogov , Peter Pfaffelhuber , Angelika Börsch-Haubold , Bernhard Haubold : High-complexity regions in mammalian genomes are enriched for developmental genes. Bioinform. 37 (19 ) : 3388 (2021 )share record
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Xiaolan Chen , Hui Yang , Guifen Liu , Yong Zhang : NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes. BMC Bioinform. 22 (1 ) : 321 (2021 )export record
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journals/bmcbi/MacDonaldL21 share record
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Madolyn L. MacDonald , Kelvin H. Lee : EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality. BMC Bioinform. 22 (1 ) : 570 (2021 )2019 export record
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journals/bioinformatics/PirogovPBH19 share record
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Anton Pirogov , Peter Pfaffelhuber , Angelika Börsch-Haubold , Bernhard Haubold : High-complexity regions in mammalian genomes are enriched for developmental genes. Bioinform. 35 (11 ) : 1813-1819 (2019 )export record
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journals/bioinformatics/SwensonB19 share record
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Krister M. Swenson , Mathieu Blanchette : Large-scale mammalian genome rearrangements coincide with chromatin interactions. Bioinform. 35 (14 ) : i117-i126 (2019 )export record
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journals/bmcbi/ZehnderBV19 share record
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Tobias Zehnder , Philipp Benner , Martin Vingron : Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinform. 20 (1 ) : 157:1-157:12 (2019 )2018 share record
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Mario A. Flores , Ivan Ovcharenko : Enhancer reprogramming in mammalian genomes. BMC Bioinform. 19 (1 ) : 316:1-316:10 (2018 )2017 export record
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journals/bioinformatics/PavlovicRPKCZ17 share record
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Milos Pavlovic , Pradipta Ray , Kristina Pavlovic , Aaron Kotamarti , Min Chen , Michael Q. Zhang : DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes. Bioinform. 33 (19 ) : 2986-2994 (2017 )export record
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journals/nar/PenzkoferJFBMRZ17 share record
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Tobias Penzkofer , Marten Jäger , Marek Figlerowicz , Richard Badge , Stefan Mundlos , Peter N. Robinson , Tomasz Zemojtel : L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes. Nucleic Acids Res. 45 (Database-Issue ) : D68-D73 (2017 )2016 export record
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journals/biodb/JorqueraOOCSGH16 share record
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Roddy Jorquera , Rodrigo Ortiz , Francisco Ossandón , Juan Pablo Cárdenas , Rene Sepúlveda , Carolina González , David S. Holmes : SinEx DB: a database for single exon coding sequences in mammalian genomes. Database J. Biol. Databases Curation 2016 (2016 )export record
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journals/biodb/NakagawaT16 share record
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So Nakagawa , Mahoko Ueda Takahashi : gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes. Database J. Biol. Databases Curation 2016 (2016 )2015 export record
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journals/bioinformatics/DucheneH15 share record
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Sebastián Duchêne , Simon Y. W. Ho : Mammalian genome evolution is governed by multiple pacemakers. Bioinform. 31 (13 ) : 2061-2065 (2015 )export record
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journals/bioinformatics/ShenWYSMZZ15 share record
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Wenlong Shen , Dong Wang , Bingyu Ye , Minglei Shi , Lei Ma , Yan Zhang , Zhihu Zhao : GC3-biased gene domains in mammalian genomes. Bioinform. 31 (19 ) : 3081-3084 (2015 )2014 export record
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journals/ploscb/ElhaikG14 share record
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Eran Elhaik , Dan Graur : A Comparative Study and a Phylogenetic Exploration of the Compositional Architectures of Mammalian Nuclear Genomes. PLoS Comput. Biol. 10 (11 ) (2014 )2013 share record
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Marc Santolini : Analyse computationnelle des éléments cis-régulateurs dans les génomes des drosophiles et des mammifères. (Computational analysis of cis-regulatory elements in drosophilae and mammalian genomes). Paris Diderot University, France, 2013 2012 export record
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journals/bmcbi/Blanchette12 share record
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Mathieu Blanchette : Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites. BMC Bioinform. 13 (S-19 ) : S2 (2012 )2011 share record
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Gang Hu , Shiyi Shen , Kui Wang : On the evolution rate in mammalian mitochondrial genomes. Comput. Biol. Chem. 35 (3 ) : 137-142 (2011 )export record
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journals/nar/BlakeBKREG11 share record
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Judith A. Blake , Carol J. Bult , James A. Kadin , Joel E. Richardson , Janan T. Eppig : The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res. 39 (Database-Issue ) : 842-848 (2011 )export record
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journals/nar/CerBMYVLBCS11 share record
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Regina Z. Cer , Kevin H. Bruce , Uma Mudunuri , Ming Yi , Natalia Volfovsky , Brian T. Luke , Albino Bacolla , Jack R. Collins , Robert M. Stephens : Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes. Nucleic Acids Res. 39 (Database-Issue ) : 383-391 (2011 )2010 export record
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journals/bioinformatics/RamseyKKZGGJLLNSAS10 share record
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Stephen A. Ramsey , Theo A. Knijnenburg , Kathleen A. Kennedy , Daniel E. Zak , Mark Gilchrist , Elizabeth S. Gold , Carrie D. Johnson , Aaron E. Lampano , Vladimir Litvak , Garnet Navarro , Tetyana Stolyar , Alan Aderem , Ilya Shmulevich : Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites. Bioinform. 26 (17 ) : 2071-2075 (2010 )export record
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journals/cominfsys/AlekseyevPPT10 share record
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Max A. Alekseyev , Qian Peng , Pavel A. Pevzner , Glenn Tesler : Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications. Commun. Inf. Syst. 10 (1 ) : 1-22 (2010 )2009 share record
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Qian Peng , Max A. Alekseyev , Glenn Tesler , Pavel A. Pevzner : Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. WABI 2009 : 220-232 2008 share record
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Claire Lemaitre : Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassure. (Chromosomal rearrangements in mammalian genomes : characterising the breakpoints). Claude Bernard University Lyon 1, France, 2008 share record
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Kyoung-Jae Won , Iouri Chepelev , Bing Ren , Wei Wang : Prediction of regulatory elements in mammalian genomes using chromatin signatures. BMC Bioinform. 9 (2008 )export record
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journals/ploscb/ChauveT08 share record
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Cédric Chauve , Eric Tannier : A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes. PLoS Comput. Biol. 4 (11 ) (2008 )2007 export record
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journals/nar/FerrettiPBCRB07 share record
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Vincent Ferretti , Christian Poitras , Dominique Bergeron , Benoit Coulombe , François Robert , Mathieu Blanchette : PReMod: a database of genome-wide mammalian cis -regulatory module predictions. Nucleic Acids Res. 35 (Database-Issue ) : 122-126 (2007 )export record
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journals/ploscb/ChungWSPN07 share record
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Wen-Yu Chung , Samir Wadhawan , Radek Szklarczyk , Sergei L. Kosakovsky Pond , Anton Nekrutenko : A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes. PLoS Comput. Biol. 3 (5 ) (2007 )export record
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journals/ploscb/GiordanoGGABW07 share record
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Joti Giordano , Yongchao Ge , Yevgeniy Gelfand , György Abrusán , Gary Benson , Peter E. Warburton : Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation. PLoS Comput. Biol. 3 (7 ) (2007 )